Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0305200-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:11515408:11525785:1 gene:Os06g0305200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin, non-repetitive/WGA-negative domain containing protein. (Os06t0305200-01);Similar to NUP155 (Nucleoporin 155). (Os06t0305200-02)
Sequence	ATGGCTTGGGCGGAGGACGAGGCGATTGGCCCCGACGTGGCCTCCGCGGGGCTCCACGTC TCGGAGCGGATCGGCCGCGACGCCGCCGCTCAGCCCGACCTGGAGGAGGCCCTCGAGGCC TCGCGCTACGCCTCCCATCCCTACTCCTCGCATCCCAAGGAGTGGCCTCCTTTGGTGGAA GTAGCAGAAACTAGGCAGTTACCTCCTATGCTGGTTGAAAGATATAATGCCGCTGCTGGT GAAGGAACAGCTCTTTGTGGAATATTTTCTGAAGTACACCGTGCCTGGGCAACTGTTGAC AATTCATTTTTTATTTGGCGCTTTGATAAGTGGGATGGGCAATGTCAAGAGCATAACGCG GATGAACAAGTGATTTGTGCTGTTGGCCTTGCTAGAGCAAAGCCTGGTGTTTTTGTTGCA GCCATTCAGTACCTTTTAGTATTAGCAACTCCTGTTGAGCTGATACTTGTCGGAGTTTGC TGTTCAGCTAGTGGTGATGGAACTGATCCGTATGCGGAGCTCTCATTGCAACCTTTACCT GAGTACATTATTTCTACTGATGGTGTCACAATGACATGCATCACTTGTACAGATAAGGGT CAAATTTTCCTATCTGGGCGTGATGGCCATATATATGAGCTGCAATATACAACTGGTTCA GGTTGGCGAAAGCGCTGCCGTAAAGTTTGCCTTACTACTGGTTTAGGCAGCCTTCTTTCC AGGTGGGTTTTGCCAAATGCATTCAAGTTCTCGGCTGTTGATCCTATTGTTGATATGGTT ATTGATGAGGAGAGAAATACAATTTATGCGCGCACAGAAGGCATGAAGATGCAGCTATTT GATTTAGGAGCTACTGGCGATGGTCCTCTGAGAAAGATCACTGAAGAAAAGAATCTTGTT GATCCACGAGATGCACCTTATGGCAGTCGGAGGCCTAATGCACAAAGAGCTGCACGATCC CCAAAACCATCAATTGTCTGCATTGCACCTTTGTCAGCTATGGAATCAAAATGGCTTCAT GCTGTTGCTGTTTTATCAGATGGCAAGAGACTGTTCCTTTCTACATCAGGTGGGAGTAGT TCAGTTGGACTTAGCACTGGTTTGCAGAGGCCAAGCTGTCTAAAAATTGTTGCTACCAGG CCTTCCCCACCTCTAGGGGTTGGTGGTGGTCTCACATTTGGTGCTGTTTCAGCTGCTGGC AGAGCTCAACCTGAGGATCTTGCTTTAAAAGTGGAGTCCGCTTTCTATTCTGCCGGTGCT CTTATAATGTCAGATTCATCTGCTACAGCTATGTCCTCCCTTCTCGCTGTGCAGAAAGAT TCAGCTGCCCAATTATCCCTTCCCAGTACTTTTGGGACAGCATCTAGAAGCTCGAGGGCT CTGCGAGAAACAGTCTCTGCTTTGCCTGTTGAAGGTCGGATGCTTTGTGCCTCTGATGTC TTCCCGCTTCCAGATGCTGCTTTCATCATGCAGTCATTATATGCAGACGTGGAATGCTTT GCATCTTTTGGAAAACCTTCTGAGAAGTCATCCATTAAACTGTGGGCTAAAGGAGATCTT CCTACCCAGCATATCTTACCTCGGAGGAGGATTGTTATATTCAATACTATGGGTTTGATG GAGGTAGTTTTTAACAGACCTGTTGATATCCTAAGAAAATTGTTTGATGGGAACACTTTG AGATCTCAGTTAGAAGAATTCTTTAGCCGCTTTGGTGCTGGAGAGGCTGCAGCAATGTGC TTAATGCTAGCTGCTAAGCTGCTTTATGCTGAAGATAGCCTGATAAGCAATGCAGTTTCT GAGAAAGCTGCTGAAGCATTTGAGGACCCTGGACTTGTCGGAATGCCTCAAATTGATGGC AGTACTGCCTTGTCTAACACTCGAACTCAGGCTGGAGGCTTTAGTATGGGACAAGTTGTT CAAGAAGCACAACCTATATTTTCTGGTGCATATGAAGGGCTTTGCTTGTGCTCTTCTAGA CTACTGTATCCTATCTGGGAACTTCCAATTATGGTGGTTCGAGGACTGGTAGGTTCCAAT GATCGTGGTGATGGTGTGGTTGTTTGCAGGCTTTCTACTGGGGCCATGAAGGTTCTTGAG AGTAAGATCCGTTCATTGGAAACATTTTTGAGGTCAAGAAGAAACAAAAGAAGAGGACTT TATGGTTATGTTGCTGGTCTAGGAGATTCTGGTTCCATACTGTACAAAGCAGGGCCTATC ATTGGGTCTGGTGGTCATAGCAGTGGGAAGAGTCCATACAGCTCTCGCATTAGAGACGCT GATCCAACAGATCAGTCTGCATCAAATAAAAAGCAAAGGCTGCCTTACACATCAGCCGAA CTAGCTGCGATGGAGGTGAGGGCAATTGAGTGCCTTAGGCGGTTGCTTCGAAGATCTGGT GAAGCACTCTTTCTGCTTCAACTTATTTGCCAGCATAATGTTGCTCGCTTGGTTCAGACA CTAGGTAATGATTTGCGCAAGAAACTAGTTCAGTTAACATTTCATCAGTTGGTATGTTCT GAGGATGGTGACCAGCTTGCCATGCGCCTTATTTCTGCACTCATGGAGTACTATATCGGT CCAGAGGGCAGGGGAACTGTTGATGAGATCAGCACTAAATTGAGAGAGGGTTGTCCTAGT TACTTCAATGAGTCAGATTATAAATATTACTTAGCAGTGGAATGCCTTGAGAGAGCATCT ATGACAAACAATCATGACGAGAAAGACATCCTTGCTAGAGATGCCTTCAATCTTTTAACT AAAATTCCTGACTCTGCTGACTTGAGTGCTATATGCAAGAGATTTGAGAACCTAAGGTTC TACGAGGCAGTAGTCCGTTTGCCTTTACAGAAAGCTCAAGCACTTGATTCCAATGCTGAT GTTATTAATGGGCAAATCGACGCAAGGCATCATGATACTATAACTGCACAGCGTGAACAG TGCTATAAAATAGTTATGAATGCTTTACGTACCCTCAAGGGTGTTGGACAGAGTGGCACA CAAGGTGCAGACAAGTCATCTGCTTCAGTTACTGCACTTGATCCAGCTTCTCGAGGGAAG TATATTAAACAGATTATTCAATTAAGTGTCCAGTGGCCAGACACAGTGTTTCATGAGCAT CTGTATAGGACTCTTATTGAGCTTGGTTTGGAAAATGAACTTTTGGAATATGGAGGTTCT GATCTGGTTGCTTTTCTCCAGAGCGCTGGTCGTAAGCATCATGAAGAGGTTCAAGGACTT TCTGTGGTTGCATCAAAAGCCTCTAAACTGACTGATTTGGATGCACCTATTTCAACTAGT CAAACCAAGTATCTTGAGCTGCTAGCCAGGTATTATGTTCTCAAGGGGGAGCATATTGCT GCTGCTAGAATGTTGTTGATATTGGCAGAAAGACAGTGCTCCAGTGCGGAAGAAGCTCCA ACTCTTGACCAGAGGTATCAATATCTGAGCAGTGCAGCGATTCAGGCCAAAAGTGCAGGC ATTACTGCAGATTCTTCGAGGAATCCTATTGATAGCAGCACGATAGATCTACTTGAAGGC AAACTTGCAGTTCTTCGGTTCCAAATGCAAATCAAGCAAGAACTAGAGTTCATGGCTTCA CAGCTTGAAAATCTGTCAGGCAGTTCTGAATCACCAAATGATCCCTTTCCTCGTGATAAC ATTCTAGCTGATGCGGATACTGCTAGATTTGCCATGGACAAGGCTAAAGAGCTTTCACTG AATCTAAAGAGTATTACTCAACTTTACAACGATTATGCTGTTCCATTTAATCTTTGGGAG GTTTGCCTGGAAATGCTCAACTTTGCAAATTATTCTGGAGATGCTGACAGTAAAATTGTT CGAGAAATTTGGGCCAGGCTTCTTGACCAGGCACTTACAAGAGGTGGTGTTGCAGAAGCA TGTTCTGTGGTGAGAAGAGTAGGTTCAAAACTTGATCCTGCAGATGGCGCTTGTTTACCA TTGGATATAATATGCCTTCATCTCGAGAAGGCTGCATTGGATAGATTAAGCTCAGGAGAA GAATTAGTTGGTGACGAGGATGTTGCAAGAGCCCTTCTCGGAGCCTGTAAAGGTCTACCT GAACCTGTGCTTGCCGTGTATGATCAACTGTTATCAAATGGCGCTATTGTTCCCTCCCTA AACCTGAAGCTGCGGCTTCTGAGATCAGTTCTTGCAATCCTTCGTGAATGGGGCATGACT GTCATTGCACATAAACTAGGCACCACAACTGCTGGGGCTTCATTCTTTCTTGATGGAACA TTTTCGCTGAATCAAACATGGTCTTTAAATCAAGGCGTTCGAGATAAAATAAGTAGTTTG GCAAACCGGTATATGGCTGAGGTGAGGCGGTTAAGCCTTCCAAAGAACCAAACAGAGAAT GTCTATCGAGGTTTCCAAGAGCTAGAGGAGAAATTATTAACTAATTAG

Peptide Sequence

PEP ID	Os06t0305200-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:11515408:11525785:1 gene:Os06g0305200 transcript:Os06t0305200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin, non-repetitive/WGA-negative domain containing protein. (Os06t0305200-01);Similar to NUP155 (Nucleoporin 155). (Os06t0305200-02)
Sequence	MAWAEDEAIGPDVASAGLHVSERIGRDAAAQPDLEEALEASRYASHPYSSHPKEWPPLVE VAETRQLPPMLVERYNAAAGEGTALCGIFSEVHRAWATVDNSFFIWRFDKWDGQCQEHNA DEQVICAVGLARAKPGVFVAAIQYLLVLATPVELILVGVCCSASGDGTDPYAELSLQPLP EYIISTDGVTMTCITCTDKGQIFLSGRDGHIYELQYTTGSGWRKRCRKVCLTTGLGSLLS RWVLPNAFKFSAVDPIVDMVIDEERNTIYARTEGMKMQLFDLGATGDGPLRKITEEKNLV DPRDAPYGSRRPNAQRAARSPKPSIVCIAPLSAMESKWLHAVAVLSDGKRLFLSTSGGSS SVGLSTGLQRPSCLKIVATRPSPPLGVGGGLTFGAVSAAGRAQPEDLALKVESAFYSAGA LIMSDSSATAMSSLLAVQKDSAAQLSLPSTFGTASRSSRALRETVSALPVEGRMLCASDV FPLPDAAFIMQSLYADVECFASFGKPSEKSSIKLWAKGDLPTQHILPRRRIVIFNTMGLM EVVFNRPVDILRKLFDGNTLRSQLEEFFSRFGAGEAAAMCLMLAAKLLYAEDSLISNAVS EKAAEAFEDPGLVGMPQIDGSTALSNTRTQAGGFSMGQVVQEAQPIFSGAYEGLCLCSSR LLYPIWELPIMVVRGLVGSNDRGDGVVVCRLSTGAMKVLESKIRSLETFLRSRRNKRRGL YGYVAGLGDSGSILYKAGPIIGSGGHSSGKSPYSSRIRDADPTDQSASNKKQRLPYTSAE LAAMEVRAIECLRRLLRRSGEALFLLQLICQHNVARLVQTLGNDLRKKLVQLTFHQLVCS EDGDQLAMRLISALMEYYIGPEGRGTVDEISTKLREGCPSYFNESDYKYYLAVECLERAS MTNNHDEKDILARDAFNLLTKIPDSADLSAICKRFENLRFYEAVVRLPLQKAQALDSNAD VINGQIDARHHDTITAQREQCYKIVMNALRTLKGVGQSGTQGADKSSASVTALDPASRGK YIKQIIQLSVQWPDTVFHEHLYRTLIELGLENELLEYGGSDLVAFLQSAGRKHHEEVQGL SVVASKASKLTDLDAPISTSQTKYLELLARYYVLKGEHIAAARMLLILAERQCSSAEEAP TLDQRYQYLSSAAIQAKSAGITADSSRNPIDSSTIDLLEGKLAVLRFQMQIKQELEFMAS QLENLSGSSESPNDPFPRDNILADADTARFAMDKAKELSLNLKSITQLYNDYAVPFNLWE VCLEMLNFANYSGDADSKIVREIWARLLDQALTRGGVAEACSVVRRVGSKLDPADGACLP LDIICLHLEKAALDRLSSGEELVGDEDVARALLGACKGLPEPVLAVYDQLLSNGAIVPSL NLKLRLLRSVLAILREWGMTVIAHKLGTTTAGASFFLDGTFSLNQTWSLNQGVRDKISSL ANRYMAEVRRLSLPKNQTENVYRGFQELEEKLLTN

Transcript Sequence

Transcript ID	Os06t0305200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:11515408:11525785:1 gene:Os06g0305200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleoporin, non-repetitive/WGA-negative domain containing protein. (Os06t0305200-01);Similar to NUP155 (Nucleoporin 155). (Os06t0305200-02)
Sequence	CCCACCCAAACCCTAGCCCCGCGCCGCTCCATCTCCCACCGGCGCGCGCCGTCGCCGCCG CCGCCGCCTCCGCCTCCGCCTCGCGCCGTCGCCGCCACTTCCGCCTTCGCCTCCACCTCC GCCTCGTTTCCCCAACGCGCCACGGCAAAAGCGGGGGAACCCGCGCTGGAAAACTTGAAA AACCCCAACCTAACCCCCTCCCACCCCGCCATTCCTCACATTTGCACCCCCATCGCTGCG CTCTAGGTTTTTTTTTTTCCTCCGCGCCTTCTCCCCGCAAGAGGCGTATTGCTCCGGCGA TGGCTTGGGCGGAGGACGAGGCGATTGGCCCCGACGTGGCCTCCGCGGGGCTCCACGTCT CGGAGCGGATCGGCCGCGACGCCGCCGCTCAGCCCGACCTGGAGGAGGCCCTCGAGGCCT CGCGCTACGCCTCCCATCCCTACTCCTCGCATCCCAAGGAGTGGCCTCCTTTGGTGGAAG TAGCAGAAACTAGGCAGTTACCTCCTATGCTGGTTGAAAGATATAATGCCGCTGCTGGTG AAGGAACAGCTCTTTGTGGAATATTTTCTGAAGTACACCGTGCCTGGGCAACTGTTGACA ATTCATTTTTTATTTGGCGCTTTGATAAGTGGGATGGGCAATGTCAAGAGCATAACGCGG ATGAACAAGTGATTTGTGCTGTTGGCCTTGCTAGAGCAAAGCCTGGTGTTTTTGTTGCAG CCATTCAGTACCTTTTAGTATTAGCAACTCCTGTTGAGCTGATACTTGTCGGAGTTTGCT GTTCAGCTAGTGGTGATGGAACTGATCCGTATGCGGAGCTCTCATTGCAACCTTTACCTG AGTACATTATTTCTACTGATGGTGTCACAATGACATGCATCACTTGTACAGATAAGGGTC AAATTTTCCTATCTGGGCGTGATGGCCATATATATGAGCTGCAATATACAACTGGTTCAG GTTGGCGAAAGCGCTGCCGTAAAGTTTGCCTTACTACTGGTTTAGGCAGCCTTCTTTCCA GGTGGGTTTTGCCAAATGCATTCAAGTTCTCGGCTGTTGATCCTATTGTTGATATGGTTA TTGATGAGGAGAGAAATACAATTTATGCGCGCACAGAAGGCATGAAGATGCAGCTATTTG ATTTAGGAGCTACTGGCGATGGTCCTCTGAGAAAGATCACTGAAGAAAAGAATCTTGTTG ATCCACGAGATGCACCTTATGGCAGTCGGAGGCCTAATGCACAAAGAGCTGCACGATCCC CAAAACCATCAATTGTCTGCATTGCACCTTTGTCAGCTATGGAATCAAAATGGCTTCATG CTGTTGCTGTTTTATCAGATGGCAAGAGACTGTTCCTTTCTACATCAGGTGGGAGTAGTT CAGTTGGACTTAGCACTGGTTTGCAGAGGCCAAGCTGTCTAAAAATTGTTGCTACCAGGC CTTCCCCACCTCTAGGGGTTGGTGGTGGTCTCACATTTGGTGCTGTTTCAGCTGCTGGCA GAGCTCAACCTGAGGATCTTGCTTTAAAAGTGGAGTCCGCTTTCTATTCTGCCGGTGCTC TTATAATGTCAGATTCATCTGCTACAGCTATGTCCTCCCTTCTCGCTGTGCAGAAAGATT CAGCTGCCCAATTATCCCTTCCCAGTACTTTTGGGACAGCATCTAGAAGCTCGAGGGCTC TGCGAGAAACAGTCTCTGCTTTGCCTGTTGAAGGTCGGATGCTTTGTGCCTCTGATGTCT TCCCGCTTCCAGATGCTGCTTTCATCATGCAGTCATTATATGCAGACGTGGAATGCTTTG CATCTTTTGGAAAACCTTCTGAGAAGTCATCCATTAAACTGTGGGCTAAAGGAGATCTTC CTACCCAGCATATCTTACCTCGGAGGAGGATTGTTATATTCAATACTATGGGTTTGATGG AGGTAGTTTTTAACAGACCTGTTGATATCCTAAGAAAATTGTTTGATGGGAACACTTTGA GATCTCAGTTAGAAGAATTCTTTAGCCGCTTTGGTGCTGGAGAGGCTGCAGCAATGTGCT TAATGCTAGCTGCTAAGCTGCTTTATGCTGAAGATAGCCTGATAAGCAATGCAGTTTCTG AGAAAGCTGCTGAAGCATTTGAGGACCCTGGACTTGTCGGAATGCCTCAAATTGATGGCA GTACTGCCTTGTCTAACACTCGAACTCAGGCTGGAGGCTTTAGTATGGGACAAGTTGTTC AAGAAGCACAACCTATATTTTCTGGTGCATATGAAGGGCTTTGCTTGTGCTCTTCTAGAC TACTGTATCCTATCTGGGAACTTCCAATTATGGTGGTTCGAGGACTGGTAGGTTCCAATG ATCGTGGTGATGGTGTGGTTGTTTGCAGGCTTTCTACTGGGGCCATGAAGGTTCTTGAGA GTAAGATCCGTTCATTGGAAACATTTTTGAGGTCAAGAAGAAACAAAAGAAGAGGACTTT ATGGTTATGTTGCTGGTCTAGGAGATTCTGGTTCCATACTGTACAAAGCAGGGCCTATCA TTGGGTCTGGTGGTCATAGCAGTGGGAAGAGTCCATACAGCTCTCGCATTAGAGACGCTG ATCCAACAGATCAGTCTGCATCAAATAAAAAGCAAAGGCTGCCTTACACATCAGCCGAAC TAGCTGCGATGGAGGTGAGGGCAATTGAGTGCCTTAGGCGGTTGCTTCGAAGATCTGGTG AAGCACTCTTTCTGCTTCAACTTATTTGCCAGCATAATGTTGCTCGCTTGGTTCAGACAC TAGGTAATGATTTGCGCAAGAAACTAGTTCAGTTAACATTTCATCAGTTGGTATGTTCTG AGGATGGTGACCAGCTTGCCATGCGCCTTATTTCTGCACTCATGGAGTACTATATCGGTC CAGAGGGCAGGGGAACTGTTGATGAGATCAGCACTAAATTGAGAGAGGGTTGTCCTAGTT ACTTCAATGAGTCAGATTATAAATATTACTTAGCAGTGGAATGCCTTGAGAGAGCATCTA TGACAAACAATCATGACGAGAAAGACATCCTTGCTAGAGATGCCTTCAATCTTTTAACTA AAATTCCTGACTCTGCTGACTTGAGTGCTATATGCAAGAGATTTGAGAACCTAAGGTTCT ACGAGGCAGTAGTCCGTTTGCCTTTACAGAAAGCTCAAGCACTTGATTCCAATGCTGATG TTATTAATGGGCAAATCGACGCAAGGCATCATGATACTATAACTGCACAGCGTGAACAGT GCTATAAAATAGTTATGAATGCTTTACGTACCCTCAAGGGTGTTGGACAGAGTGGCACAC AAGGTGCAGACAAGTCATCTGCTTCAGTTACTGCACTTGATCCAGCTTCTCGAGGGAAGT ATATTAAACAGATTATTCAATTAAGTGTCCAGTGGCCAGACACAGTGTTTCATGAGCATC TGTATAGGACTCTTATTGAGCTTGGTTTGGAAAATGAACTTTTGGAATATGGAGGTTCTG ATCTGGTTGCTTTTCTCCAGAGCGCTGGTCGTAAGCATCATGAAGAGGTTCAAGGACTTT CTGTGGTTGCATCAAAAGCCTCTAAACTGACTGATTTGGATGCACCTATTTCAACTAGTC AAACCAAGTATCTTGAGCTGCTAGCCAGGTATTATGTTCTCAAGGGGGAGCATATTGCTG CTGCTAGAATGTTGTTGATATTGGCAGAAAGACAGTGCTCCAGTGCGGAAGAAGCTCCAA CTCTTGACCAGAGGTATCAATATCTGAGCAGTGCAGCGATTCAGGCCAAAAGTGCAGGCA TTACTGCAGATTCTTCGAGGAATCCTATTGATAGCAGCACGATAGATCTACTTGAAGGCA AACTTGCAGTTCTTCGGTTCCAAATGCAAATCAAGCAAGAACTAGAGTTCATGGCTTCAC AGCTTGAAAATCTGTCAGGCAGTTCTGAATCACCAAATGATCCCTTTCCTCGTGATAACA TTCTAGCTGATGCGGATACTGCTAGATTTGCCATGGACAAGGCTAAAGAGCTTTCACTGA ATCTAAAGAGTATTACTCAACTTTACAACGATTATGCTGTTCCATTTAATCTTTGGGAGG TTTGCCTGGAAATGCTCAACTTTGCAAATTATTCTGGAGATGCTGACAGTAAAATTGTTC GAGAAATTTGGGCCAGGCTTCTTGACCAGGCACTTACAAGAGGTGGTGTTGCAGAAGCAT GTTCTGTGGTGAGAAGAGTAGGTTCAAAACTTGATCCTGCAGATGGCGCTTGTTTACCAT TGGATATAATATGCCTTCATCTCGAGAAGGCTGCATTGGATAGATTAAGCTCAGGAGAAG AATTAGTTGGTGACGAGGATGTTGCAAGAGCCCTTCTCGGAGCCTGTAAAGGTCTACCTG AACCTGTGCTTGCCGTGTATGATCAACTGTTATCAAATGGCGCTATTGTTCCCTCCCTAA ACCTGAAGCTGCGGCTTCTGAGATCAGTTCTTGCAATCCTTCGTGAATGGGGCATGACTG TCATTGCACATAAACTAGGCACCACAACTGCTGGGGCTTCATTCTTTCTTGATGGAACAT TTTCGCTGAATCAAACATGGTCTTTAAATCAAGGCGTTCGAGATAAAATAAGTAGTTTGG CAAACCGGTATATGGCTGAGGTGAGGCGGTTAAGCCTTCCAAAGAACCAAACAGAGAATG TCTATCGAGGTTTCCAAGAGCTAGAGGAGAAATTATTAACTAATTAGACATTTCAATTTG TATTCTCGGCACTGTAAAACATGGGTTCGTGCATTTGTTGTACCCAAGTAGAGAGATAAA GCTAAGCCATCCTGGTTCAATTGGACATG