Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0299300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:11132811:11134650:-1 gene:Os06g0299300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os06t0299300-01)
Sequence

ATGGCTAGTCATGTCTTCATGATCCGGCAAGAGACGGCGCCGGCGCAGTGGTGGTTCCTC
TCGCTGGCTTTCGTCGGCGCCGCCTACGCCGCCACCGTCACGCTCCGTTTCGTCGCCTAC
CTCGCGCTCTGCCGGTGTCACCGGCCGAAGGACGACCTCCGCCGCCGGTACGGCGAATGG
GCCGTCGTCACCGGGCCAACGTCCGGCATCGGCCGTGCCATGGCGCTGGAGCTCGCGCGC
CACGGCCTCAACCTCGTGCTCGTCGGCCGTGACCCAGCCATCCTCCGGGAGATCTCCGGC
ACGGTCAGGTCTCTCCACAAAGTGAAGACCAAGACCGTGGTGTTTGACCTGTCCCTCGTC
TGGACCCCCGATGGTGATGAGCCGCTGCGGCGGCTGCGGGAGGCGGTGGAGGGGCTGGAC
GTCGGGGTGGTGGTGAACAACGCCGGCGTGGCGAAGCCCGGCGCCGTCTACCTGCACGAG
GCGGACGTGGAGGCGTGGGTGAGGATGGTGCGGGTGAACATGTCGGCAGTGACGGAGGTG
ACGGCGGTGGTGCTACCTGGGATGGTGTCGCGGGGTAGGGGCGCCATCGTCAACATCGGC
TCGGCTGGGTCGGAGTACATCCCGACCTTACCTCTCTACACCATGTACGCCGCCACCAAA
CGGTACGTGGCTCAGTTCTCCCGGAGCCTTCACGTCGAGTATGCAAGTAAAGGGATCCAT
GTGCAGTGCCAGGCGCCGTTCTTCGTGGATACGAGGCTGATGTTCAGGTTCGAGGAGGCG
GCGGGCGGCGTATCGCTGTTCACGGTGACCCCTGACGCGTACGCGCGCGCGGCGGTGGCG
TGGATCGGCCGCGGCGGCGCGCTGTGCACGCCGGCCGTCCGGCACCAGCTGCTACGGCGC
ATGGCCGCCGCCGCGCCGGACTCCGTCCACGACTGGATCCTCCTGCGCTTAGCCACCTGG
AACAGAAAACGTTGTTTCAGCGGATCTGAGTGA

Peptide Sequence

PEP ID

Os06t0299300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:11132811:11134650:-1 gene:Os06g0299300 transcript:Os06t0299300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os06t0299300-01)
Sequence

MASHVFMIRQETAPAQWWFLSLAFVGAAYAATVTLRFVAYLALCRCHRPKDDLRRRYGEW
AVVTGPTSGIGRAMALELARHGLNLVLVGRDPAILREISGTVRSLHKVKTKTVVFDLSLV
WTPDGDEPLRRLREAVEGLDVGVVVNNAGVAKPGAVYLHEADVEAWVRMVRVNMSAVTEV
TAVVLPGMVSRGRGAIVNIGSAGSEYIPTLPLYTMYAATKRYVAQFSRSLHVEYASKGIH
VQCQAPFFVDTRLMFRFEEAAGGVSLFTVTPDAYARAAVAWIGRGGALCTPAVRHQLLRR
MAAAAPDSVHDWILLRLATWNRKRCFSGSE

Transcript Sequence

Transcript ID

Os06t0299300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:11132811:11134650:-1 gene:Os06g0299300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase/reductase SDR domain containing protein. (Os06t0299300-01)
Sequence

ATAGTTTTGGCGACTCGGCGAGTAACCGTTCCAAATCGCTCTCAACCGCGCCATGGCCGG
CTAGACTGCATGCTAATGCTACACATTTATATTGTACAACCCCGCCGGTGGGGAGGAAGA
GAGAGCGAGAGAGCGAATCATCATGGCTAGTCATGTCTTCATGATCCGGCAAGAGACGGC
GCCGGCGCAGTGGTGGTTCCTCTCGCTGGCTTTCGTCGGCGCCGCCTACGCCGCCACCGT
CACGCTCCGTTTCGTCGCCTACCTCGCGCTCTGCCGGTGTCACCGGCCGAAGGACGACCT
CCGCCGCCGGTACGGCGAATGGGCCGTCGTCACCGGGCCAACGTCCGGCATCGGCCGTGC
CATGGCGCTGGAGCTCGCGCGCCACGGCCTCAACCTCGTGCTCGTCGGCCGTGACCCAGC
CATCCTCCGGGAGATCTCCGGCACGGTCAGGTCTCTCCACAAAGTGAAGACCAAGACCGT
GGTGTTTGACCTGTCCCTCGTCTGGACCCCCGATGGTGATGAGCCGCTGCGGCGGCTGCG
GGAGGCGGTGGAGGGGCTGGACGTCGGGGTGGTGGTGAACAACGCCGGCGTGGCGAAGCC
CGGCGCCGTCTACCTGCACGAGGCGGACGTGGAGGCGTGGGTGAGGATGGTGCGGGTGAA
CATGTCGGCAGTGACGGAGGTGACGGCGGTGGTGCTACCTGGGATGGTGTCGCGGGGTAG
GGGCGCCATCGTCAACATCGGCTCGGCTGGGTCGGAGTACATCCCGACCTTACCTCTCTA
CACCATGTACGCCGCCACCAAACGGTACGTGGCTCAGTTCTCCCGGAGCCTTCACGTCGA
GTATGCAAGTAAAGGGATCCATGTGCAGTGCCAGGCGCCGTTCTTCGTGGATACGAGGCT
GATGTTCAGGTTCGAGGAGGCGGCGGGCGGCGTATCGCTGTTCACGGTGACCCCTGACGC
GTACGCGCGCGCGGCGGTGGCGTGGATCGGCCGCGGCGGCGCGCTGTGCACGCCGGCCGT
CCGGCACCAGCTGCTACGGCGCATGGCCGCCGCCGCGCCGGACTCCGTCCACGACTGGAT
CCTCCTGCGCTTAGCCACCTGGAACAGAAAACGTTGTTTCAGCGGATCTGAGTGACAGAT
GACAGATTATGTGATGCTAAAGAATTGCCAACAAATAAATAATGTGTCTTCGAAAAGTGC
AATTGCCGAG