Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0264300-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:8720636:8726617:1 gene:Os06g0264300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rad23 description:Similar to RAD23, isoform I. (Os06t0264300-01);Similar to RAD23, isoform I. (Os06t0264300-02);Similar to DNA repair protein RAD23. (Os06t0264300-03)
Sequence

ATGAAGCTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAG
GCGTCGGTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTACCCG
GCGGATCAGCAGATGCTCATACACCAAGGGAAAATTCTCAAGGATGATACAACTTTGGAA
GGCAACAAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGGCCAAAGCATCA
TCAAGTGGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGTCTCAACCAGCAACTCCA
GTTGCCTCAGTTGCAAGAACACCACCTCCACAAGCACCTGTTGTTACACCTGAACCGGCA
CCTCCAAGTGCACAGCCTCCAGTTGCTTCTGCCACTCCAGCTGCTGCTGCCACTCCAGCT
GCTGCTGTGACCGCATCAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTT
TCAGGTAGCAACCTAGAACAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACCTGG
GAACGTGACATGGTTGTCCGTGCTTTGCGTGCTGCATATAACAACCCTGAGAGAGCTATT
GACTATCTGTATTCTGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCA
CCTGCTGCTGTTCAACAGGGAAATCCACAGGTTCCATCTCAGGCTCAGGCTGCACCTCCA
CCGCCTGTGCAGCCAGCTGGTGGTGCCTCAGGACCTAATGCGAATCCTCTAAACCTATTC
CCCCAGGGCATTCCAAGTGCTGGGTCAAATCCTGGTGCTGCTGCTGGTGCCGGTGCCGGT
GCTGGTGCCCTTGATGCATTGCGACAACTTCCACAGTTCCAAGCGCTGCTTGCATTGGTC
CAGGCTAATCCCCAAATCTTGCAGCCAATGCTTCAAGAGCTTGGGAAGCAGAATCCGCAA
ATCTTGCGGTTGATTCAGGAAAATCAGGCTGAATTTCTCCGTCTGGTGAATGAATCTCCT
GATAGCGGCGCTGCTGGGGGAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCA
CTTACAGTTACTCCAGAGGAACGGGAGGCCATTCAGCGGCTGGAGGCAATGGGGTTCAAC
CGTGAGCTCGTTTTGGAGGTCTTCTTCGCATGCAACAAGGATGAAGAGCTGGCTGCCAAC
TATCTTTTGGATCATGGCCATGAGTTTGAGGATCAACAATAG

Peptide Sequence

PEP ID

Os06t0264300-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:8720636:8726617:1 gene:Os06g0264300 transcript:Os06t0264300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rad23 description:Similar to RAD23, isoform I. (Os06t0264300-01);Similar to RAD23, isoform I. (Os06t0264300-02);Similar to DNA repair protein RAD23. (Os06t0264300-03)
Sequence

MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE
GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA
PPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMGGGTW
ERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPP
PPVQPAGGASGPNANPLNLFPQGIPSAGSNPGAAAGAGAGAGALDALRQLPQFQALLALV
QANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSGAAGGNILGQLAAAMPQA
LTVTPEEREAIQRLEAMGFNRELVLEVFFACNKDEELAANYLLDHGHEFEDQQ

Transcript Sequence

Transcript ID

Os06t0264300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:8720636:8726617:1 gene:Os06g0264300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rad23 description:Similar to RAD23, isoform I. (Os06t0264300-01);Similar to RAD23, isoform I. (Os06t0264300-02);Similar to DNA repair protein RAD23. (Os06t0264300-03)
Sequence

CTCGTCGTCGTCGTCGCCGCCGCGAGCGAACCGGGAGGAGAAAGTCCAAACCCTCGCGAA
GGCAGAGTCGGGGATAGGGATATCGCCGAGGTGGGAGAAGGCGACGTCGCCGACATGAAG
CTGTTCGTGAAGACCCTGAAGGGCACCAACTTCGAGATCGAGGCGAGCCCCGAGGCGTCG
GTGGCTGAGGTGAAGAGAATCATTGAGAGTACTCAGGGGCAGAATGTGTACCCGGCGGAT
CAGCAGATGCTCATACACCAAGGGAAAATTCTCAAGGATGATACAACTTTGGAAGGCAAC
AAAGTTGCTGAGAACAGCTTCCTTGTTATAATGCTGTCTAAGGCCAAAGCATCATCAAGT
GGAGCTTCAACTGCTTCAAAGGCACCTGTGAGCCAGTCTCAACCAGCAACTCCAGTTGCC
TCAGTTGCAAGAACACCACCTCCACAAGCACCTGTTGTTACACCTGAACCGGCACCTCCA
AGTGCACAGCCTCCAGTTGCTTCTGCCACTCCAGCTGCTGCTGCCACTCCAGCTGCTGCT
GTGACCGCATCAAGTGATGCGGATGTCTACAGTCAGGCTGCATCAAATCTTGTTTCAGGT
AGCAACCTAGAACAGACAATCCAACAAATTCTTGACATGGGTGGTGGCACCTGGGAACGT
GACATGGTTGTCCGTGCTTTGCGTGCTGCATATAACAACCCTGAGAGAGCTATTGACTAT
CTGTATTCTGGAATTCCTGAGAATGTGGAGCCCCCACAACCTGTGGCTCGAGCACCTGCT
GCTGTTCAACAGGGAAATCCACAGGTTCCATCTCAGGCTCAGGCTGCACCTCCACCGCCT
GTGCAGCCAGCTGGTGGTGCCTCAGGACCTAATGCGAATCCTCTAAACCTATTCCCCCAG
GGCATTCCAAGTGCTGGGTCAAATCCTGGTGCTGCTGCTGGTGCCGGTGCCGGTGCTGGT
GCCCTTGATGCATTGCGACAACTTCCACAGTTCCAAGCGCTGCTTGCATTGGTCCAGGCT
AATCCCCAAATCTTGCAGCCAATGCTTCAAGAGCTTGGGAAGCAGAATCCGCAAATCTTG
CGGTTGATTCAGGAAAATCAGGCTGAATTTCTCCGTCTGGTGAATGAATCTCCTGATAGC
GGCGCTGCTGGGGGAAACATACTAGGTCAACTAGCAGCCGCTATGCCACAGGCACTTACA
GTTACTCCAGAGGAACGGGAGGCCATTCAGCGGCTGGAGGCAATGGGGTTCAACCGTGAG
CTCGTTTTGGAGGTCTTCTTCGCATGCAACAAGGATGAAGAGCTGGCTGCCAACTATCTT
TTGGATCATGGCCATGAGTTTGAGGATCAACAATAGGTGTTGTTAGTTTGGTCTCATCGT
GGCTGGGAGACCCCAAAAAAAAAATGAAATCGAGGCAGAAGCAGTGCAGTTCAGTATCGT
TATTATTTCTGACTGCTGAGAGATACCTGGCCGTGTGTGCAATGCCGCTGACTATGTTTT
AATTTCCTGTGTCTTGGGAATGCTTTTAAAGTACATATTAATTTCATATTCACATATTAT
ACTGTGT