Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0255100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:8038476:8041831:-1 gene:Os06g0255100 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0255100-01)
Sequence

ATGGCGTCCTCCGCCGCCGCCGCCGCGGCAACGGACCGCATCGCCCTCGTCAAGGCCTTC
GACGAGACACGCACCGGCGTCCGCGGCCTCGTCGAGTCCGGCGTCTCTGCCGTCCCGGTC
ATCTTCCGCCACCCCGACCCCTACGCCTCCGTCCCCCTCGCTCCACCCGGCGTCTCCATC
CCCGTCGTCAACCTCTCCCTCCCCGCGCCGCTCGCCGCCGAGGCCGCGGCGGGAGCCGCG
CGCGACTGGGGGTTCTTCTACCTCGTCAACCACCACGCCCTTGTCCCCTCCGGCTTCACC
GCCGGGCTCCTCGCCGCCGTCCGCGCCTTCAACGAGCTCCCCGCCGCGGAGCGCGCCGCG
CACTACGGCCGCTCCGTGGACGGCGGGGTCAGCTACTCCTCCAACGTCGACCTGTACCGG
TCGGGCGCCGCGAGCTGGCGCGACACGATCCAGGTCGTGCTCGGGCCCTCGCGGCCCGAC
GCGGAGCGCATCCCGGCGGCGTGCCGCGCCGAGGTCGTCGGCTGGGACGCGCACGCCACC
GCCGTGGCCCGCGCCGTCATGGCGCTGCTCTGCGAGGGGCTCGGCCTCCGGGGCGAGACG
CTGGAGGAGGCCTCCTGCCTCGAGGGGAAATTGATGGTGTGCCACTACTACCCGGTGTGC
CCTGAGCCCGAGCGCACCATGGGGATCGTCCCGCACACGGACCCCGGCGTGCTCACCGTC
CTCGCGCAGGACGGCGTCGGTGGCCTGCAGGTGAAGCACACGAACGAGGATGGGGAGAGC
TACTGGGTGGATACCAAGCCTGTGCCTGGCGCTCTTGTGATCAATGTCGGGGACCTATTG
CAGATCATGTCTAATGATAAGTACAAGAGTGTGGAACACCGGGTAGTAATGAAGTCGCAT
GAAGAAGCCAGAGTTTCAAGCGCCATCTTTTACAATCCTGGCAAGAGAGGCGACTCTGTT
TTTTATGGACCATTGCCAGATCTGATTTCTTCGGGAAACCCACCAAAGTACAGGAATTTT
ACTATGTCTGAGTTTCTGGGGGCCTTCTTTAAACGAGACCTTGCGAGCAAAGCTCTCATC
GAGCACTTCAAAATATAA

Peptide Sequence

PEP ID

Os06t0255100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:8038476:8041831:-1 gene:Os06g0255100 transcript:Os06t0255100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0255100-01)
Sequence

MASSAAAAAATDRIALVKAFDETRTGVRGLVESGVSAVPVIFRHPDPYASVPLAPPGVSI
PVVNLSLPAPLAAEAAAGAARDWGFFYLVNHHALVPSGFTAGLLAAVRAFNELPAAERAA
HYGRSVDGGVSYSSNVDLYRSGAASWRDTIQVVLGPSRPDAERIPAACRAEVVGWDAHAT
AVARAVMALLCEGLGLRGETLEEASCLEGKLMVCHYYPVCPEPERTMGIVPHTDPGVLTV
LAQDGVGGLQVKHTNEDGESYWVDTKPVPGALVINVGDLLQIMSNDKYKSVEHRVVMKSH
EEARVSSAIFYNPGKRGDSVFYGPLPDLISSGNPPKYRNFTMSEFLGAFFKRDLASKALI
EHFKI

Transcript Sequence

Transcript ID

Os06t0255100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:8038476:8041831:-1 gene:Os06g0255100 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0255100-01)
Sequence

CTGCTACTGTTCTTGCCTTCTTGCCCTCCACACTGTCCACGTCTCTCCAAACTCCAAGAC
TCCATCGCCATCAACAACGCGGCGACCATGGCGTCCTCCGCCGCCGCCGCCGCGGCAACG
GACCGCATCGCCCTCGTCAAGGCCTTCGACGAGACACGCACCGGCGTCCGCGGCCTCGTC
GAGTCCGGCGTCTCTGCCGTCCCGGTCATCTTCCGCCACCCCGACCCCTACGCCTCCGTC
CCCCTCGCTCCACCCGGCGTCTCCATCCCCGTCGTCAACCTCTCCCTCCCCGCGCCGCTC
GCCGCCGAGGCCGCGGCGGGAGCCGCGCGCGACTGGGGGTTCTTCTACCTCGTCAACCAC
CACGCCCTTGTCCCCTCCGGCTTCACCGCCGGGCTCCTCGCCGCCGTCCGCGCCTTCAAC
GAGCTCCCCGCCGCGGAGCGCGCCGCGCACTACGGCCGCTCCGTGGACGGCGGGGTCAGC
TACTCCTCCAACGTCGACCTGTACCGGTCGGGCGCCGCGAGCTGGCGCGACACGATCCAG
GTCGTGCTCGGGCCCTCGCGGCCCGACGCGGAGCGCATCCCGGCGGCGTGCCGCGCCGAG
GTCGTCGGCTGGGACGCGCACGCCACCGCCGTGGCCCGCGCCGTCATGGCGCTGCTCTGC
GAGGGGCTCGGCCTCCGGGGCGAGACGCTGGAGGAGGCCTCCTGCCTCGAGGGGAAATTG
ATGGTGTGCCACTACTACCCGGTGTGCCCTGAGCCCGAGCGCACCATGGGGATCGTCCCG
CACACGGACCCCGGCGTGCTCACCGTCCTCGCGCAGGACGGCGTCGGTGGCCTGCAGGTG
AAGCACACGAACGAGGATGGGGAGAGCTACTGGGTGGATACCAAGCCTGTGCCTGGCGCT
CTTGTGATCAATGTCGGGGACCTATTGCAGATCATGTCTAATGATAAGTACAAGAGTGTG
GAACACCGGGTAGTAATGAAGTCGCATGAAGAAGCCAGAGTTTCAAGCGCCATCTTTTAC
AATCCTGGCAAGAGAGGCGACTCTGTTTTTTATGGACCATTGCCAGATCTGATTTCTTCG
GGAAACCCACCAAAGTACAGGAATTTTACTATGTCTGAGTTTCTGGGGGCCTTCTTTAAA
CGAGACCTTGCGAGCAAAGCTCTCATCGAGCACTTCAAAATATAAAGTTATTCAAATGTT
GCAGATAAAAAGGTTTAAACTTCTGTGAACTTTGTAGATGTCGATACTGATAGTGTGATG
TTGGTGTTCTACTTCTTAATCATAAAAGCCTCATAGAGTGTTCTTCAAATAGATAAAAGG
TTTAAACTTCTATAAACTACATTGATGCCGTTGCCGATAATGTAATGCCATGGTTCTACT
TGATC