Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0247500-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:7649087:7654307:-1 gene:Os06g0247500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pyrophosphate-dependent phosphofrucokinase beta-subunit, PFP beta-subunit, Pyrophosphate-Fru-6-P1-phosphotransferase description:Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta subunit, Regulation of carbon metabolism during grain filling (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit. (Os06t0247500-02)
Sequence	ATGGCGGCGGCGGCGGTGGCGGCGAACGGCGGCGGCGACGGCGCGCAGGCGTCCAACGCG CCCGCCCCCACCAGGCTCGCGTCGGTCTACAGCGAGGTGCAGACCAGCCGCCTCAAGCAC GCGCTCCCCCTCCCCTCCGTCCTCCGCTCCCCCTTCGCCCTCGCCGACGGCCCCGCCAGC TCCGCCGCCGGCAACCCCGGTGAGATCGCGAAGCTGTTCCCCAACCTGTTCGGCCAGCCG TCCGTGTCGCTGGTGCCGTCGCCGGAGCCGGCGTCCACCAGGCCGCTCAAGGTCGGCGTC GTGCTCTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGATTAC CTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTGGAGTC ATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTATGTGTACCCCTACAGAAACCAGGGT GGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGTTCAAGCAA GCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTGTCATTGGTGGTGATGAT TCAAACACAAACGCATGCCTTCTTGCTGAGTACTTCAGGGGGAAGAACATGAAAACTCGT GTCATTGGTTGCCCAAAGACTATTGATGGAGATCTGAAATGCAAGGAGGTTCCAACAAGC TTTGGGTTTGACACTGCTTGCAAGATATACTCTGAAATGATTGGTAATGTTATGACTGAT GCACGCTCAACCGGGAAGTACTACCACTTTGTGAGGCTTATGGGACGTGCTGCTTCTCAC ATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGGTT GCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACATTGTCTGCAAG CGTGCAGAACTTGGTTACAACTATGGTGTGATCCTTATCCCAGAGGGTCTGATTGATTTC ATCCCAGAGGTTCAAAAACTCATTGCAGAATTGAATGAAATTTTGGCGCATGATGTTGTT GATGAGGCAGGGGCTTGGAAAAGCAAGCTTCAACCAGAATCCAGGCAACTGTTTGACTTC CTGCCCAAAACCATCCAGGAGCAACTTTTGCTTGAAAGAGATCCTCATGGAAATGTTCAG GTTGCAAAAATTGAAACAGAGAAAATGCTTATTGCCATGGTTGAGACTGAATTGGAGAAG AGAAAAGCTGAGGGGAAGTACCCCGCACATTTCAGAGGCCAATCTCACTTCTTTGGATAT GAAGGAAGATGTGGCCTTCCTACTATTTTTGATTCTAACTATTGCTATGCGTTAGGCTAC GGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGGTTGGCAACCTC GCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTT GAGAGGAGGCACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTGACGGG GCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATC AGCCCTGGTCCCATCCAGTTCAGTGGCCCTGGAAGCAACGATGCGAACCACACCTTGATG TTGGAACTCGGCGCCGAGGCATAG

Peptide Sequence

PEP ID	Os06t0247500-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:7649087:7654307:-1 gene:Os06g0247500 transcript:Os06t0247500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pyrophosphate-dependent phosphofrucokinase beta-subunit, PFP beta-subunit, Pyrophosphate-Fru-6-P1-phosphotransferase description:Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta subunit, Regulation of carbon metabolism during grain filling (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit. (Os06t0247500-02)
Sequence	MAAAAVAANGGGDGAQASNAPAPTRLASVYSEVQTSRLKHALPLPSVLRSPFALADGPAS SAAGNPGEIAKLFPNLFGQPSVSLVPSPEPASTRPLKVGVVLSGGQAPGGHNVICGIFDY LQEYAKGSVMYGFKGGPAGVMKCKYVELTADYVYPYRNQGGFDMICSGRDKIETPEQFKQ AEDTVNKLDLDGLVVIGGDDSNTNACLLAEYFRGKNMKTRVIGCPKTIDGDLKCKEVPTS FGFDTACKIYSEMIGNVMTDARSTGKYYHFVRLMGRAASHITLECALQTHPNVALIGEEV AAKKETLKSVTDYITDIVCKRAELGYNYGVILIPEGLIDFIPEVQKLIAELNEILAHDVV DEAGAWKSKLQPESRQLFDFLPKTIQEQLLLERDPHGNVQVAKIETEKMLIAMVETELEK RKAEGKYPAHFRGQSHFFGYEGRCGLPTIFDSNYCYALGYGSGALLQCGKTGLITSVGNL AAPVEEWTVGGTALTSLMDVERRHGKYKPVIKKAMVELDGAPFKKFASLRDEWSLKNHYI SPGPIQFSGPGSNDANHTLMLELGAEA

Transcript Sequence

Transcript ID	Os06t0247500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:7649087:7654307:-1 gene:Os06g0247500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:pyrophosphate-dependent phosphofrucokinase beta-subunit, PFP beta-subunit, Pyrophosphate-Fru-6-P1-phosphotransferase description:Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (PFP) beta subunit, Regulation of carbon metabolism during grain filling (Os06t0247500-01);Similar to pyrophosphate--fructose 6-phosphate 1-phosphotransferase beta subunit. (Os06t0247500-02)
Sequence	GCTCTCTCGGCATATTCTCTTCCACCCCCGAAACCACTCCAAAACCAAACCAAATCTCGC GGCGCATGGCGGCGGCGGCGGTGGCGGCGAACGGCGGCGGCGACGGCGCGCAGGCGTCCA ACGCGCCCGCCCCCACCAGGCTCGCGTCGGTCTACAGCGAGGTGCAGACCAGCCGCCTCA AGCACGCGCTCCCCCTCCCCTCCGTCCTCCGCTCCCCCTTCGCCCTCGCCGACGGCCCCG CCAGCTCCGCCGCCGGCAACCCCGGTGAGATCGCGAAGCTGTTCCCCAACCTGTTCGGCC AGCCGTCCGTGTCGCTGGTGCCGTCGCCGGAGCCGGCGTCCACCAGGCCGCTCAAGGTCG GCGTCGTGCTCTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCG ATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTG GAGTCATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTATGTGTACCCCTACAGAAACC AGGGTGGATTTGATATGATCTGCAGTGGTAGGGACAAGATTGAAACACCAGAGCAGTTCA AGCAAGCTGAAGACACTGTAAACAAACTTGATTTGGATGGGCTTGTTGTCATTGGTGGTG ATGATTCAAACACAAACGCATGCCTTCTTGCTGAGTACTTCAGGGGGAAGAACATGAAAA CTCGTGTCATTGGTTGCCCAAAGACTATTGATGGAGATCTGAAATGCAAGGAGGTTCCAA CAAGCTTTGGGTTTGACACTGCTTGCAAGATATACTCTGAAATGATTGGTAATGTTATGA CTGATGCACGCTCAACCGGGAAGTACTACCACTTTGTGAGGCTTATGGGACGTGCTGCTT CTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAG AGGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACATTGTCT GCAAGCGTGCAGAACTTGGTTACAACTATGGTGTGATCCTTATCCCAGAGGGTCTGATTG ATTTCATCCCAGAGGTTCAAAAACTCATTGCAGAATTGAATGAAATTTTGGCGCATGATG TTGTTGATGAGGCAGGGGCTTGGAAAAGCAAGCTTCAACCAGAATCCAGGCAACTGTTTG ACTTCCTGCCCAAAACCATCCAGGAGCAACTTTTGCTTGAAAGAGATCCTCATGGAAATG TTCAGGTTGCAAAAATTGAAACAGAGAAAATGCTTATTGCCATGGTTGAGACTGAATTGG AGAAGAGAAAAGCTGAGGGGAAGTACCCCGCACATTTCAGAGGCCAATCTCACTTCTTTG GATATGAAGGAAGATGTGGCCTTCCTACTATTTTTGATTCTAACTATTGCTATGCGTTAG GCTACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGGTTGGCA ACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGG ATGTTGAGAGGAGGCACGGAAAGTACAAGCCAGTGATCAAGAAGGCTATGGTGGAACTTG ACGGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATT ACATCAGCCCTGGTCCCATCCAGTTCAGTGGCCCTGGAAGCAACGATGCGAACCACACCT TGATGTTGGAACTCGGCGCCGAGGCATAGAGAGACACGACGATACCGACGTGTACCTTTT AAATTTTTTGTTCTTACAGTTTTGAAAAGTTGAGATGGAACCTCGCAGAGTGACCTGCAG GCTCCATATTTGTGGAGTGCTCAATAAGAGGTTCCATTGGGAGTTTCTGTGGAGTAGAGA TATGTGTACCAATAATAACTGATGTTAGCTTTGCATG