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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0245600-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:7555243:7558430:-1 gene:Os06g0245600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice plasticity 1 description:Similar to cDNA clone:J023144O06, full insert sequence. (Os06t0245600-01);Regulation of phenotypic plasticity (Os06t0245600-02)
Sequence

ATGAAAGATTGGGTGGCCGAGCTCCAGAGCGAGAACGAGCGCCTCGTTGCCAAGCTGACC
CAAAAGGAGCAGCAGCTTGTGGAGGCACAGACGCTTTTACTTGATGAGACTCGGAAGACA
AAGGAGCTCAATAGTGAAATATTGAAACTTCAGTGTCTCCTGGCTGAGAAGAATGATGCA
AACCATATTGCGACAGGGTCTCCTGACACAACCGCCGAAATGACTATAGAAAATCAAACT
CCAATTTCACCTGCAAAGAAGACGCCAAAGTCAAACAGCAGGGAGAGAAATATTCGCTCC
ATTGAAAAAGCGATTGTTCCTCGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCC
TGTAGAAGACATATGAGCATCTCAGGGAGTGCGACAGAAGAAAGTTCCAGTACCTGTATG
TTTCATCTGCTGGCTGAATCAATGGTTGGGATGAAATTTTCAGTGAAGAACGAAACAGAA
GGATTTTCACTTTCAGTCTCCCATGAAGCTAGTGGTTACAACTTCACTCTCACATGGGTA
GACCAACCTGGTGGCAGTGAATGGTCATATCAGTACTCCTCGTTGGGCACCCTGGACAGG
ATAGCTATGGGCTGGATGAAGGAGGACATAAAATTCAGCTCGACCATGTGTCCTGTATTC
TTCAAGCAGATATCGCACATCCTCAGGCAATGCTAA

Peptide Sequence

PEP ID

Os06t0245600-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:7555243:7558430:-1 gene:Os06g0245600 transcript:Os06t0245600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice plasticity 1 description:Similar to cDNA clone:J023144O06, full insert sequence. (Os06t0245600-01);Regulation of phenotypic plasticity (Os06t0245600-02)
Sequence

MKDWVAELQSENERLVAKLTQKEQQLVEAQTLLLDETRKTKELNSEILKLQCLLAEKNDA
NHIATGSPDTTAEMTIENQTPISPAKKTPKSNSRERNIRSIEKAIVPRNGFQEEGRDLDS
CRRHMSISGSATEESSSTCMFHLLAESMVGMKFSVKNETEGFSLSVSHEASGYNFTLTWV
DQPGGSEWSYQYSSLGTLDRIAMGWMKEDIKFSSTMCPVFFKQISHILRQC

Transcript Sequence

Transcript ID

Os06t0245600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:7555243:7558430:-1 gene:Os06g0245600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rice plasticity 1 description:Similar to cDNA clone:J023144O06, full insert sequence. (Os06t0245600-01);Regulation of phenotypic plasticity (Os06t0245600-02)
Sequence

GAGCCCGCGGCCGCGGGTTTCAAAAATTTCCCCAAAATCTCGTCCCCCCTTCGTCCCCGT
CTCCTCCGCTCCCCCGCTCCACCCGCCGCCGCCGCGTCCGCTCTCGACGACGACCTCGAA
GCGGCCGCCGGCCTCCATCCAGGGCCATACATCCATCCGCCATCTGCTACGCTTCTCCGC
ACCGATGGAGCAGCTCAACGCCAAGCTCTACCACAGAAGCGGAAGCTGCTCGACGAGGGG
CTGGACCAGAAGCGGGCTGCCGACATCAACGAGCTCCGCCAAGCCATGAAAGATTGGGTG
GCCGAGCTCCAGAGCGAGAACGAGCGCCTCGTTGCCAAGCTGACCCAAAAGGAGCAGCAG
CTTGTGGAGGCACAGACGCTTTTACTTGATGAGACTCGGAAGACAAAGGAGCTCAATAGT
GAAATATTGAAACTTCAGTGTCTCCTGGCTGAGAAGAATGATGCAAACCATATTGCGACA
GGGTCTCCTGACACAACCGCCGAAATGACTATAGAAAATCAAACTCCAATTTCACCTGCA
AAGAAGACGCCAAAGTCAAACAGCAGGGAGAGAAATATTCGCTCCATTGAAAAAGCGATT
GTTCCTCGTAATGGCTTTCAGGAGGAAGGAAGAGATCTTGATTCCTGTAGAAGACATATG
AGCATCTCAGGGAGTGCGACAGAAGAAAGTTCCAGTACCTGTATGTTTCATCTGCTGGCT
GAATCAATGGTTGGGATGAAATTTTCAGTGAAGAACGAAACAGAAGGATTTTCACTTTCA
GTCTCCCATGAAGCTAGTGGTTACAACTTCACTCTCACATGGGTAGACCAACCTGGTGGC
AGTGAATGGTCATATCAGTACTCCTCGTTGGGCACCCTGGACAGGATAGCTATGGGCTGG
ATGAAGGAGGACATAAAATTCAGCTCGACCATGTGTCCTGTATTCTTCAAGCAGATATCG
CACATCCTCAGGCAATGCTAAGCTCAACTGGGAAGCTTTGTTTGGGTTTAGCTTAGTTTC
TGTACTGGACTTCTGCTAGATAGTGGACTGAAACTGACTTGTTTTAGAGGTGACACGAGG
CTTTATGTATCCTTTCGTTTGTCCTTCGTTGTTCCTGTTGTGAACATACTAGTAACAATT
AGCAAGTTATTCTGGGTGTTGGTTGCCGTATGTCTTTATGTATAGCCCCTGATTTGAACT
C