Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0244100-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:7488097:7491295:1 gene:Os06g0244100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0244100-01);Hypothetical conserved gene. (Os06t0244100-02)
Sequence

ATGGCGCGGCCGCCGTCTCCCTCACCGGTCGTCCCCGTCAAGCGAGAGCCCGACGGAGCC
ACCGCCGCGGTCTCGGATGCCTACACGCCCCGCCCACCGCTGCGGAAGAGGCGCCGCCTC
CCGTCCACCCCGACCCAGCCCCTCCTCCTCACGCCGCAGGCCATGAGCTCGACGCGCGAC
TCCTTCGCGGGGGAGCGGAGCGGCCTGGCTCCGGCGTCCGTGCCCACCTCCGTGAAGCGC
GAACTCGGCGCCGACGGTGACGGCGATGGCGACGGCGACCGGGACGCCCGCGGGAAGGCG
GTCAGCGTGGCGGAGGGCAACCTCCAGCCCCGGAAAACCGCTCTGGCGGAGCTCCCCACC
CTCTTGGCCAACCGCCGCCGCCTCGACCGCCTCCTCCACGAGCTCGTCCGCTCGCACCGC
TGGGGCGACGCGGCCGGCGTCATCTCCGCGCTCGTCTCCGGCACACGGCACCCCGAATCC
TTCGATGAGATGCGCAGCGTGTTCGCGGTCGGGATGGAGATCCATAGGCGGCTCGCTGAG
AACAGCGGCATCCAACAGAACACCAGGAGTCGCTACTACCTCAGGACGCAAAAGTTGTAC
GATGTTTGGATGCGGAGGCTAATGTGGTTACCCACTTGTGAAAGAAAATACATGGTTAAA
CTCGAGCTAGCTCTTTTTTATCTTTCACAAGGTTGTATCGACAGCGCATACAACACAACA
AAAACTCTTATTGCTAAGGATGGACTAAAGACACCAATTGTAAATCTTATACATGGTCTG
ATATCATATGATAATTGGTATTCTGGCCTCCCTGAAGATATGCAACTTGAGGAGTTTGAT
GTTTACTGTGAATCACACACAGTTTCAATGGCAACACATCACTGTGATGAAAATGGTCAG
CAGGATACTTCAGATGATAATTGCAGCATTGATGCTGATTCCAGTTCTCCTGGTTGCTCT
TCAAAAAGTTCAATCAATAATTGGAACATAGACAAGCAAAGAAAGTTTCCCGAGAAACCT
GGTTTTGTTCATTCTGCACGGGAAGATGATTCAGTTGGATCACAGGTGGACGAGAAAATG
GTTGATACAGATTTTCGAAGCGTGTTTTTCAATACCGCCAACAGTCCTACTTGTGGTGCA
AGCAAGGCTGGCTCCATGATTTCGTTTCCTAATTATTCTCATATGAGGCTATGCCAGGTA
GCTTTGGGACCCACAGCTGTAAGACTGGACTTTCGAGTCGTGGGCACCACAGCCAAGCTA
ATTCAGCAAGTTTCACAATTCTTTAATAAAGTTTTTCAGTTTGTAATTAAGTTGATTAGC
AATTTTCTTGGTAAAAGAATTAGTTCAAGCCTTTTCGTATTTGAGTATGAGGTTTTTATT
CTTTCAAGATAA

Peptide Sequence

PEP ID

Os06t0244100-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:7488097:7491295:1 gene:Os06g0244100 transcript:Os06t0244100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0244100-01);Hypothetical conserved gene. (Os06t0244100-02)
Sequence

MARPPSPSPVVPVKREPDGATAAVSDAYTPRPPLRKRRRLPSTPTQPLLLTPQAMSSTRD
SFAGERSGLAPASVPTSVKRELGADGDGDGDGDRDARGKAVSVAEGNLQPRKTALAELPT
LLANRRRLDRLLHELVRSHRWGDAAGVISALVSGTRHPESFDEMRSVFAVGMEIHRRLAE
NSGIQQNTRSRYYLRTQKLYDVWMRRLMWLPTCERKYMVKLELALFYLSQGCIDSAYNTT
KTLIAKDGLKTPIVNLIHGLISYDNWYSGLPEDMQLEEFDVYCESHTVSMATHHCDENGQ
QDTSDDNCSIDADSSSPGCSSKSSINNWNIDKQRKFPEKPGFVHSAREDDSVGSQVDEKM
VDTDFRSVFFNTANSPTCGASKAGSMISFPNYSHMRLCQVALGPTAVRLDFRVVGTTAKL
IQQVSQFFNKVFQFVIKLISNFLGKRISSSLFVFEYEVFILSR

Transcript Sequence

Transcript ID

Os06t0244100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:7488097:7491295:1 gene:Os06g0244100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os06t0244100-01);Hypothetical conserved gene. (Os06t0244100-02)
Sequence

AAAAAAAAAATCTGCCCCTCCTAAAACCCTTGCGGCCAGGCGGTGCGCCGCACGCCCATG
GCGCGGCCGCCGTCTCCCTCACCGGTCGTCCCCGTCAAGCGAGAGCCCGACGGAGCCACC
GCCGCGGTCTCGGATGCCTACACGCCCCGCCCACCGCTGCGGAAGAGGCGCCGCCTCCCG
TCCACCCCGACCCAGCCCCTCCTCCTCACGCCGCAGGCCATGAGCTCGACGCGCGACTCC
TTCGCGGGGGAGCGGAGCGGCCTGGCTCCGGCGTCCGTGCCCACCTCCGTGAAGCGCGAA
CTCGGCGCCGACGGTGACGGCGATGGCGACGGCGACCGGGACGCCCGCGGGAAGGCGGTC
AGCGTGGCGGAGGGCAACCTCCAGCCCCGGAAAACCGCTCTGGCGGAGCTCCCCACCCTC
TTGGCCAACCGCCGCCGCCTCGACCGCCTCCTCCACGAGCTCGTCCGCTCGCACCGCTGG
GGCGACGCGGCCGGCGTCATCTCCGCGCTCGTCTCCGGCACACGGCACCCCGAATCCTTC
GATGAGATGCGCAGCGTGTTCGCGGTCGGGATGGAGATCCATAGGCGGCTCGCTGAGAAC
AGCGGCATCCAACAGAACACCAGGAGTCGCTACTACCTCAGGACGCAAAAGTTGTACGAT
GTTTGGATGCGGAGGCTAATGTGGTTACCCACTTGTGAAAGAAAATACATGGTTAAACTC
GAGCTAGCTCTTTTTTATCTTTCACAAGGTTGTATCGACAGCGCATACAACACAACAAAA
ACTCTTATTGCTAAGGATGGACTAAAGACACCAATTGTAAATCTTATACATGGTCTGATA
TCATATGATAATTGGTATTCTGGCCTCCCTGAAGATATGCAACTTGAGGAGTTTGATGTT
TACTGTGAATCACACACAGTTTCAATGGCAACACATCACTGTGATGAAAATGGTCAGCAG
GATACTTCAGATGATAATTGCAGCATTGATGCTGATTCCAGTTCTCCTGGTTGCTCTTCA
AAAAGTTCAATCAATAATTGGAACATAGACAAGCAAAGAAAGTTTCCCGAGAAACCTGGT
TTTGTTCATTCTGCACGGGAAGATGATTCAGTTGGATCACAGGTGGACGAGAAAATGGTT
GATACAGATTTTCGAAGCGTGTTTTTCAATACCGCCAACAGTCCTACTTGTGGTGCAAGC
AAGGCTGGCTCCATGATTTCGTTTCCTAATTATTCTCATATGAGGCTATGCCAGGTAGCT
TTGGGACCCACAGCTGTAAGACTGGACTTTCGAGTCGTGGGCACCACAGCCAAGCTAATT
CAGCAAGTTTCACAATTCTTTAATAAAGTTTTTCAGTTTGTAATTAAGTTGATTAGCAAT
TTTCTTGGTAAAAGAATTAGTTCAAGCCTTTTCGTATTTGAGTATGAGGTTTTTATTCTT
TCAAGATAATGTTTTGGATGCAAATAGAGGAACTCGTAAGTTTTCAGTAGAAAGTTTTTA
TAATTGAGTGCAAACTATGTTGTTTCAGTTG