Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0239500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:7247884:7250998:1 gene:Os06g0239500 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os06t0239500-01)
Sequence

ATGTCGGGGAAGAAGCCGACGGCGGCGCCGCCGACGGCGAGGCTGAGCAGGGCATGCGTG
ATGATCATAGTGGTGGCGAGCGTGGAGAGGTTCGCGTACAAGGGGGTGGCGTCGAACCTG
GTGACGTACCTGACGGAGGTGGTGGAGATGAGCACGTCGGCGGCGGCGAAGAGCGTCAGC
GCGTGGAGCGGGGTGACGTCCATGCTGCCGCTCCTCACCGCCGTCCTCGCCGACTCCTAC
TGGGACCGCTACTCCACCATCACCGCCTCCTCCCTCCTCTACGTCGTCGGGCTAATAGGC
CTAACTTTATGGGCACTGCTACACACACGGATGCCATGCTCCACGCTCTTCTTCCCGCTC
TACCTCATCTCCATCGGCCAAGGCGGCTACAACCCTTCGCTGCAAGCCTTCGGCGCCGAC
CAGCTCGACATCGGCGACGACGACGATGACGGCGACAATGGCGCAACAGCAGCAACAGAA
GAGCAGAGGAGCAAGGTGAAGAGCCTCTTCTTCCAGTGGTGGTACTTCGGCATCTGCAGC
GGCAGCCTGCTGGGGAACACGACAATGTCGTACGTCCAGGACACCGTCGGCTGGGGCCTC
GGCTTCGCCGTCCCGGCCGCCGTCATGGCCGTCTCCGTCGCCGCCTTCTTCTGCTGCACC
CCCCTCTACAAGCAGAGGCAACCCAGAGCTGTTCATCGCAAGCCCTGTCGTGACAGCGTC
CTCAAAGCCCTGAAATCGCTTCTCGCAAGTGTCACTGGCGCCAGAAAGATCACCCTGCCA
TCCAGAGACGGCGACGATGACACTGACATCGTATCTGAGCTAGAGTTGCAGGAGAAGCCA
CTGAAGCTGGCTGATCAGAAGCAGGAGGCGGCCATGGGAGAGGCTGCAGCACCAAGTGTA
GCCAAGATCATAGTGAGGCTGCTCCCAATCTGGACGATGCTGCTCATGTTCGCGGTCATC
TTCCAGCAGCCGATGACGTTCTTCACCAAGCAGGGGATGCTGATGGACCACCGCGTCGGC
GCCGTGTTCGTGATCCCCCCGGCGATGCTGCAGAGCTCCATCACCGTCTCCATCATCCTC
CTCATGCCGCTCTACGACACGGTGGTGGTGCCGCTCGCCGGCCTCGTCGCCGGCCACGGC
AAGGGGATCACGGTGCTCCAGCGGATCGGCGTCGGGATGGTGCTCTCCATCGTCGCCATG
GCGGTCGCCGCGCTCGTCGAGGCGCGCCGCCTCCGCGCCGCCGCGTCGTCCTCGTCCGGC
GGCCGCCTGAGCATATTCTGGCTCCTCCCGCAGTACGTGCTCCTCGGCGTCTCCGACGTG
TTCACGGTGGTGGGCATGCAGGAGTTCTTCTACACCCAGGTCCCCAGCGCCATGAGGACC
GTCGGCATCGCGCTCTACCTCAGCGTCTTCGGCGTCGGCAGCTTCGTCGGCGCGTTCCTC
ATCACCGCGCTCGAGATGGTGACGGCGGGGGGCGGCGGCGGCGGGCACGATCACGGGTGG
TTCTCCGATGATCCCCGGGAGGCGCGGCTGGACAAGTACTACTGGTTCTTGGCGCTCCTC
AGCTGCGTCAGCTTCGTCGTCTTCACACACTTGTGCAAGTACTACTAG

Peptide Sequence

PEP ID

Os06t0239500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:7247884:7250998:1 gene:Os06g0239500 transcript:Os06t0239500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os06t0239500-01)
Sequence

MSGKKPTAAPPTARLSRACVMIIVVASVERFAYKGVASNLVTYLTEVVEMSTSAAAKSVS
AWSGVTSMLPLLTAVLADSYWDRYSTITASSLLYVVGLIGLTLWALLHTRMPCSTLFFPL
YLISIGQGGYNPSLQAFGADQLDIGDDDDDGDNGATAATEEQRSKVKSLFFQWWYFGICS
GSLLGNTTMSYVQDTVGWGLGFAVPAAVMAVSVAAFFCCTPLYKQRQPRAVHRKPCRDSV
LKALKSLLASVTGARKITLPSRDGDDDTDIVSELELQEKPLKLADQKQEAAMGEAAAPSV
AKIIVRLLPIWTMLLMFAVIFQQPMTFFTKQGMLMDHRVGAVFVIPPAMLQSSITVSIIL
LMPLYDTVVVPLAGLVAGHGKGITVLQRIGVGMVLSIVAMAVAALVEARRLRAAASSSSG
GRLSIFWLLPQYVLLGVSDVFTVVGMQEFFYTQVPSAMRTVGIALYLSVFGVGSFVGAFL
ITALEMVTAGGGGGGHDHGWFSDDPREARLDKYYWFLALLSCVSFVVFTHLCKYY

Transcript Sequence

Transcript ID

Os06t0239500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:7247884:7250998:1 gene:Os06g0239500 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os06t0239500-01)
Sequence

AAAGTCGAGCCGCCACAAATTGTGATTCTCTGATCCGTCATGTCGGGGAAGAAGCCGACG
GCGGCGCCGCCGACGGCGAGGCTGAGCAGGGCATGCGTGATGATCATAGTGGTGGCGAGC
GTGGAGAGGTTCGCGTACAAGGGGGTGGCGTCGAACCTGGTGACGTACCTGACGGAGGTG
GTGGAGATGAGCACGTCGGCGGCGGCGAAGAGCGTCAGCGCGTGGAGCGGGGTGACGTCC
ATGCTGCCGCTCCTCACCGCCGTCCTCGCCGACTCCTACTGGGACCGCTACTCCACCATC
ACCGCCTCCTCCCTCCTCTACGTCGTCGGGCTAATAGGCCTAACTTTATGGGCACTGCTA
CACACACGGATGCCATGCTCCACGCTCTTCTTCCCGCTCTACCTCATCTCCATCGGCCAA
GGCGGCTACAACCCTTCGCTGCAAGCCTTCGGCGCCGACCAGCTCGACATCGGCGACGAC
GACGATGACGGCGACAATGGCGCAACAGCAGCAACAGAAGAGCAGAGGAGCAAGGTGAAG
AGCCTCTTCTTCCAGTGGTGGTACTTCGGCATCTGCAGCGGCAGCCTGCTGGGGAACACG
ACAATGTCGTACGTCCAGGACACCGTCGGCTGGGGCCTCGGCTTCGCCGTCCCGGCCGCC
GTCATGGCCGTCTCCGTCGCCGCCTTCTTCTGCTGCACCCCCCTCTACAAGCAGAGGCAA
CCCAGAGCTGTTCATCGCAAGCCCTGTCGTGACAGCGTCCTCAAAGCCCTGAAATCGCTT
CTCGCAAGTGTCACTGGCGCCAGAAAGATCACCCTGCCATCCAGAGACGGCGACGATGAC
ACTGACATCGTATCTGAGCTAGAGTTGCAGGAGAAGCCACTGAAGCTGGCTGATCAGAAG
CAGGAGGCGGCCATGGGAGAGGCTGCAGCACCAAGTGTAGCCAAGATCATAGTGAGGCTG
CTCCCAATCTGGACGATGCTGCTCATGTTCGCGGTCATCTTCCAGCAGCCGATGACGTTC
TTCACCAAGCAGGGGATGCTGATGGACCACCGCGTCGGCGCCGTGTTCGTGATCCCCCCG
GCGATGCTGCAGAGCTCCATCACCGTCTCCATCATCCTCCTCATGCCGCTCTACGACACG
GTGGTGGTGCCGCTCGCCGGCCTCGTCGCCGGCCACGGCAAGGGGATCACGGTGCTCCAG
CGGATCGGCGTCGGGATGGTGCTCTCCATCGTCGCCATGGCGGTCGCCGCGCTCGTCGAG
GCGCGCCGCCTCCGCGCCGCCGCGTCGTCCTCGTCCGGCGGCCGCCTGAGCATATTCTGG
CTCCTCCCGCAGTACGTGCTCCTCGGCGTCTCCGACGTGTTCACGGTGGTGGGCATGCAG
GAGTTCTTCTACACCCAGGTCCCCAGCGCCATGAGGACCGTCGGCATCGCGCTCTACCTC
AGCGTCTTCGGCGTCGGCAGCTTCGTCGGCGCGTTCCTCATCACCGCGCTCGAGATGGTG
ACGGCGGGGGGCGGCGGCGGCGGGCACGATCACGGGTGGTTCTCCGATGATCCCCGGGAG
GCGCGGCTGGACAAGTACTACTGGTTCTTGGCGCTCCTCAGCTGCGTCAGCTTCGTCGTC
TTCACACACTTGTGCAAGTACTACTAGCATTCATCTCATCACGTAGAGATCAGATTTTAT
TTAGCATTTGTTGGAACTTGGAAGTTGGGGCCTTTGTTACTGTGTTTGTGTGTGTGTAAA
TTACACGCTTTTCATGGTGAGCTT