Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0237400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:7144218:7146074:-1 gene:Os06g0237400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to xyloglucan endotransglucosylase/hydrolase protein 1. (Os06t0237400-01)
Sequence

ATGGTTTTCCAAGTGCAGCCGCCATGGCTGCTCCTCCTCCACCTCATCGCCATCGCCGTC
CTCCTCCTGGCCGTGGATAGTGTGCCGCCGGCGCCGGCGCCGCCGCCGGCGGTGGCGACG
GTGTTCGACGACAACTACGTGGCAACATATGGTGGAGACGGCTACCACCTGGTCAACCAG
GGCACGCAGATTAGCCTCACCCTGGACAAGAGCTCTGGTGCTGGATTCAGGTCCAAGTTG
ATGTACGGCTCAGGGTTCTTCCACATGAGGATCAAGGTTCCTGCCGGCTACACTGCCGGC
GTTGTGACAGCCTACTATCTGGCGTCAGAGCCAGACTGGGACGTGCAGGACGAGGTGGAC
TTCGAGTTCCTTGGCGACAAGGATGGCAACCCCATCACCCTTCAAACCAACGTCTTCGTC
GGCGGCCACGGCGACCGCGAGCAGCGCCTCCGCCTCTGGTTCGACCCCGCTGCCGACTTC
CATGACTACTCCATCCTCTGGAACCCCTTCCACCTCGTGATATTCGTGGACGAGACGCCG
GTGAGGGTGCTGAAGAACCTGACGAGCCGGGGCCCGGAGTTCGAGTTCCCGGCGAAGCCT
ATGCGGCCGCGGGGGAGCGTGTGGGACGCCTCCGACTGGGCGACGGACGGCGGCCGGACC
AAGGTCGACTGGGCCCGCGCGCCATTCACCGCGGCCTTCCAGGGCTTCGCCGTCGACGCC
TGCGCCGCCGCCGCCGGCGGCGGCGTCAGCTCGGACGACTGCGGGTCGCCGGACACGTGG
TGGTGGAACGGCGGCGAGTACAGGAGGCTGACGGCGGCGCAGCAGGCGGCGTACGATGGC
GTGAGGGGGAACCTGACCTATGACTACTGCACCGACAATAGCAAGAAGCGCCCAGTGCCG
CCACCCGAGTGCAGCTTCACCTAA

Peptide Sequence

PEP ID

Os06t0237400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:7144218:7146074:-1 gene:Os06g0237400 transcript:Os06t0237400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to xyloglucan endotransglucosylase/hydrolase protein 1. (Os06t0237400-01)
Sequence

MVFQVQPPWLLLLHLIAIAVLLLAVDSVPPAPAPPPAVATVFDDNYVATYGGDGYHLVNQ
GTQISLTLDKSSGAGFRSKLMYGSGFFHMRIKVPAGYTAGVVTAYYLASEPDWDVQDEVD
FEFLGDKDGNPITLQTNVFVGGHGDREQRLRLWFDPAADFHDYSILWNPFHLVIFVDETP
VRVLKNLTSRGPEFEFPAKPMRPRGSVWDASDWATDGGRTKVDWARAPFTAAFQGFAVDA
CAAAAGGGVSSDDCGSPDTWWWNGGEYRRLTAAQQAAYDGVRGNLTYDYCTDNSKKRPVP
PPECSFT

Transcript Sequence

Transcript ID

Os06t0237400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:7144218:7146074:-1 gene:Os06g0237400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to xyloglucan endotransglucosylase/hydrolase protein 1. (Os06t0237400-01)
Sequence

TACTAGCAAACATTGGCTAAAGTATATATATGGTTTTCCAAGTGCAGCCGCCATGGCTGC
TCCTCCTCCACCTCATCGCCATCGCCGTCCTCCTCCTGGCCGTGGATAGTGTGCCGCCGG
CGCCGGCGCCGCCGCCGGCGGTGGCGACGGTGTTCGACGACAACTACGTGGCAACATATG
GTGGAGACGGCTACCACCTGGTCAACCAGGGCACGCAGATTAGCCTCACCCTGGACAAGA
GCTCTGGTGCTGGATTCAGGTCCAAGTTGATGTACGGCTCAGGGTTCTTCCACATGAGGA
TCAAGGTTCCTGCCGGCTACACTGCCGGCGTTGTGACAGCCTACTATCTGGCGTCAGAGC
CAGACTGGGACGTGCAGGACGAGGTGGACTTCGAGTTCCTTGGCGACAAGGATGGCAACC
CCATCACCCTTCAAACCAACGTCTTCGTCGGCGGCCACGGCGACCGCGAGCAGCGCCTCC
GCCTCTGGTTCGACCCCGCTGCCGACTTCCATGACTACTCCATCCTCTGGAACCCCTTCC
ACCTCGTGATATTCGTGGACGAGACGCCGGTGAGGGTGCTGAAGAACCTGACGAGCCGGG
GCCCGGAGTTCGAGTTCCCGGCGAAGCCTATGCGGCCGCGGGGGAGCGTGTGGGACGCCT
CCGACTGGGCGACGGACGGCGGCCGGACCAAGGTCGACTGGGCCCGCGCGCCATTCACCG
CGGCCTTCCAGGGCTTCGCCGTCGACGCCTGCGCCGCCGCCGCCGGCGGCGGCGTCAGCT
CGGACGACTGCGGGTCGCCGGACACGTGGTGGTGGAACGGCGGCGAGTACAGGAGGCTGA
CGGCGGCGCAGCAGGCGGCGTACGATGGCGTGAGGGGGAACCTGACCTATGACTACTGCA
CCGACAATAGCAAGAAGCGCCCAGTGCCGCCACCCGAGTGCAGCTTCACCTAAGCTAACT
GTGAATAAATTCACTGCACAAAATTAGCAGAATTAATTGCGAGGATGAAAGGTGCAGCAG
TATACTGGTATATGTTAGCAATTAAGCCCCGTGTTCATCCATTGGAATTCGGAAAGGTTG
TGATTACAGATAGCCATTCCGATATAAATATGGTGTGTTCTTGACTTAAGGCCCTGTTTA
GTTTCGAAACGAAAATTTTTCACCTGTCACATTAAATATTTGGATACATGTATTTAATGT
TTGGATACATGTATAGAGTATTAAATATAGTAAAAAAACTAATTACACAAATTACGTGTA
AATTGC