Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0232300-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:6866393:6869521:1 gene:Os06g0232300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 1A description:Similar to Auxin transport protein REH1. (Os06t0232300-01)
Sequence	ATGATAACGGGGGCGGACTTCTACCACGTGATGACGGCGATGGTGCCGCTGTACGTGGCG ATGATCCTGGCGTACGGGTCGGTGAAGTGGTGGCGCATCTTCACGCCCGACCAGTGCTCC GGGATCAACCGCTTCGTGGCGCTCTTCGCCGTCCCGCTCCTCTCCTTCCACTTCATCTCC ACCAACAACCCCTACACCATGAACCTCCGCTTCATCGCCGCCGACACCCTGCAGAAGCTC ATCGTCCTCGCGCTCCTCACCCTGTGGAGCCACCTCTCCCGCCGCGGCTCCCTCGAGTGG ACCATCACCCTCTTCTCCCTCTCCACGCTGCCCAACACGCTCGTCATGGGGATCCCGCTG CTGAAGGGGATGTACGGGGAGTTCTCCGGTAGCCTCATGGTGCAGATCGTGGTGCTCCAG TGCATCATCTGGTACACGCTGATGCTCTTCATGTTCGAGTACCGCGGCGCCAGGATCCTC ATCACCGAGCAGTTCCCGGACACCGCGGGCGCCATCGCGTCCATCGTCGTGGACGCCGAC GTCGTGTCGCTCGACGGGCGGAGGGACATGATCGAGACGGAGGCCGAGGTGAAGGAGGAC GGCAAGATACACGTCACCGTGCGCCGCTCCAACGCGTCGCGCTCCGACGTCTACTCGCGG CGCTCCATGGGGTTCTCCAGCACCACGCCGCGGCCGAGCAACCTCACCAACGCCGAGATC TACTCGCTGCAGTCGTCGCGCAACCCGACGCCGCGGGGCTCCAGCTTCAACCACACTGAC TTCTACTCCATGGTCGGGCGCAGCTCCAACTTCGCCGCCGGGGACGCGTTCGGGGTGCGC ACCGGCGCCACGCCGCGGCCGTCCAACTACGAGGAGGACGCGGCGGCGCCCAACAAGGCC GGCAGCAAGTACGGGCAGTACCCGGCGCCCAACCCGGCCATGGCGGCGCCGCCCAAGCCC AAGAAGGCGGCCAACGGCCAGGCCAAGGGCGAGGACGGCAAAGACCTCCACATGTTCGTC TGGAGCTCCAGCGCGTCGCCCGTGTCCGACGTCTTCGGCAACGGCGCCGAGTACAACGAC GCCGCCGCCGTCAAGGAGGTCCGCATGGCCGTCGCCTCGCCGCGCAAAGCGGACGGCGTG GAGAGGGACGACTTCAGCTTCGGGAACAGAGGCGTCGCCGAGAGGGACGCGGAGGCCGGC GACGAGAAGAGCGTGGCGGCGGCGGTGTCGGGTGAGCATGGCAAGCCTGGCTTGACGCCG GCGCCGACGGCGATGCCGCCGACGAGCGTGATGACGCGGCTCATCCTGATCATGGTGTGG CGCAAGCTCATCCGCAACCCCAACACCTACTCCAGCCTCATCGGCCTCATCTGGTCGCTC GTCTGCTTCCGGTGGAACTTCGAGATGCCGGCGATCATCCTGAAATCCATCTCCATCCTC TCCGACGCCGGCCTCGGCATGGCCATGTTCAGCCTCGGGCTGTTCATGGCGCTGCAGCCG CGGATCATCGCGTGCGGGAACAAGGTGGCGACGTTCGCCATGGCGGTGCGGTTCCTGACC GGCCCGGCCGTCATGGCCGCCGCCTCCATCGCCGTCGGCCTCCGCGGCACGCTCCTCCAC GTCGCCATCGTGCAGGCAGCGTTGCCACAGGGCATTGTCCCCTTCGTCTTCGCCAAGGAG TACAGCGTGCACCCCGACATTCTCAGCACGGCGGTCATCTTTGGCATGCTCATCGCGCTG CCCATCACGCTGGTGTACTACATCCTGCTGGGGCTGTGA

Peptide Sequence

PEP ID	Os06t0232300-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:6866393:6869521:1 gene:Os06g0232300 transcript:Os06t0232300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 1A description:Similar to Auxin transport protein REH1. (Os06t0232300-01)
Sequence	MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPL LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDAD VVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMGFSSTTPRPSNLTNAEI YSLQSSRNPTPRGSSFNHTDFYSMVGRSSNFAAGDAFGVRTGATPRPSNYEEDAAAPNKA GSKYGQYPAPNPAMAAPPKPKKAANGQAKGEDGKDLHMFVWSSSASPVSDVFGNGAEYND AAAVKEVRMAVASPRKADGVERDDFSFGNRGVAERDAEAGDEKSVAAAVSGEHGKPGLTP APTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISIL SDAGLGMAMFSLGLFMALQPRIIACGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLH VAIVQAALPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLGL

Transcript Sequence

Transcript ID	Os06t0232300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:6866393:6869521:1 gene:Os06g0232300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PIN PROTEIN 1A description:Similar to Auxin transport protein REH1. (Os06t0232300-01)
Sequence	ACCTTCCCCACCCTCATTGGCTCCCCCGCCTGCCTCCCCTTCTCCATCCACCAACTCGCC GCACACTCAACCCCGCCTCGCCGCCGCACACCACCCACCGGCGAAGAGAAGAAGTCGTGG TTTTTCTTGGCTGCAAGATGATAACGGGGGCGGACTTCTACCACGTGATGACGGCGATGG TGCCGCTGTACGTGGCGATGATCCTGGCGTACGGGTCGGTGAAGTGGTGGCGCATCTTCA CGCCCGACCAGTGCTCCGGGATCAACCGCTTCGTGGCGCTCTTCGCCGTCCCGCTCCTCT CCTTCCACTTCATCTCCACCAACAACCCCTACACCATGAACCTCCGCTTCATCGCCGCCG ACACCCTGCAGAAGCTCATCGTCCTCGCGCTCCTCACCCTGTGGAGCCACCTCTCCCGCC GCGGCTCCCTCGAGTGGACCATCACCCTCTTCTCCCTCTCCACGCTGCCCAACACGCTCG TCATGGGGATCCCGCTGCTGAAGGGGATGTACGGGGAGTTCTCCGGTAGCCTCATGGTGC AGATCGTGGTGCTCCAGTGCATCATCTGGTACACGCTGATGCTCTTCATGTTCGAGTACC GCGGCGCCAGGATCCTCATCACCGAGCAGTTCCCGGACACCGCGGGCGCCATCGCGTCCA TCGTCGTGGACGCCGACGTCGTGTCGCTCGACGGGCGGAGGGACATGATCGAGACGGAGG CCGAGGTGAAGGAGGACGGCAAGATACACGTCACCGTGCGCCGCTCCAACGCGTCGCGCT CCGACGTCTACTCGCGGCGCTCCATGGGGTTCTCCAGCACCACGCCGCGGCCGAGCAACC TCACCAACGCCGAGATCTACTCGCTGCAGTCGTCGCGCAACCCGACGCCGCGGGGCTCCA GCTTCAACCACACTGACTTCTACTCCATGGTCGGGCGCAGCTCCAACTTCGCCGCCGGGG ACGCGTTCGGGGTGCGCACCGGCGCCACGCCGCGGCCGTCCAACTACGAGGAGGACGCGG CGGCGCCCAACAAGGCCGGCAGCAAGTACGGGCAGTACCCGGCGCCCAACCCGGCCATGG CGGCGCCGCCCAAGCCCAAGAAGGCGGCCAACGGCCAGGCCAAGGGCGAGGACGGCAAAG ACCTCCACATGTTCGTCTGGAGCTCCAGCGCGTCGCCCGTGTCCGACGTCTTCGGCAACG GCGCCGAGTACAACGACGCCGCCGCCGTCAAGGAGGTCCGCATGGCCGTCGCCTCGCCGC GCAAAGCGGACGGCGTGGAGAGGGACGACTTCAGCTTCGGGAACAGAGGCGTCGCCGAGA GGGACGCGGAGGCCGGCGACGAGAAGAGCGTGGCGGCGGCGGTGTCGGGTGAGCATGGCA AGCCTGGCTTGACGCCGGCGCCGACGGCGATGCCGCCGACGAGCGTGATGACGCGGCTCA TCCTGATCATGGTGTGGCGCAAGCTCATCCGCAACCCCAACACCTACTCCAGCCTCATCG GCCTCATCTGGTCGCTCGTCTGCTTCCGGTGGAACTTCGAGATGCCGGCGATCATCCTGA AATCCATCTCCATCCTCTCCGACGCCGGCCTCGGCATGGCCATGTTCAGCCTCGGGCTGT TCATGGCGCTGCAGCCGCGGATCATCGCGTGCGGGAACAAGGTGGCGACGTTCGCCATGG CGGTGCGGTTCCTGACCGGCCCGGCCGTCATGGCCGCCGCCTCCATCGCCGTCGGCCTCC GCGGCACGCTCCTCCACGTCGCCATCGTGCAGGCAGCGTTGCCACAGGGCATTGTCCCCT TCGTCTTCGCCAAGGAGTACAGCGTGCACCCCGACATTCTCAGCACGGCGGTCATCTTTG GCATGCTCATCGCGCTGCCCATCACGCTGGTGTACTACATCCTGCTGGGGCTGTGACTGT GAACAACCACCACCAAGAACAGCATGTTTTTGCAGGTGAGGGTCGTCATGTTTGCAGCGA GTGCCGGGACAGAGGAGAAGACAAAGGGCTGCATGCATGCATCACGCTGCAGTCACCCAC CAGTTCACCATGGAGGAGGAGGAGCAAGAAGCCAAGCAACCAAGCAGCAATGCAGTGCAG CAGCTGGGTTTTCATTAGAGTTTTTTTAGGTGTAGAGATCGATGGATGGGAGTATGGATA ATTGTTTTAGGGCAGAGAGTTCCAAAAATTGCAGGCATGTGCAAAGGCTTTGGAGGGAGG GGAGGGGGAGGGGACAGGGTTCAGGTTTTTAGTACAGGGCCTGGGGGTTTATAGGGGAGT GAGAATGTGAGATGCATCGCTTGGCTGGGTTGGCTGGCCTTGTGGTGAAATGGGTGTGTG TCACTTTGGTGGAAAAAAAACAAATGGTTTAGTAGAGCTCTTGTTCATCCTACGGTATAG TAGTACTTTGGCATGGCACAATGCTTCGGCTTTGATTAGCAAGATTAATCAATAATACTA GTAATAGCT