Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0231400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:6796598:6798468:-1 gene:Os06g0231400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0231400-01)
Sequence

ATGTCGGCCACCACCACCGCGCCGTCCCCGACCCCGATCCCCATCACCACCATCGCCGAG
CTGAGGCAGCACCACTCCCAGCTCGTCCGCCTCGGCCTCGCCTCCCACCCGCCCCACGCG
CGCCGCCTCCTCGCCTTCCTCGCCCGCGACCCCGCCCACCTCCCCTACGCCGCGCGCCTC
CTCGCCCACCACCCGGACCCCCGCCCCGCCCTCCTCAACCCGCTCTTCGCCTCCCTCCCG
CCGCGCGCCGCCGCGTCGCTCCTCGCCCTCATGCTCTCCCTCCCGCTCCTCCCCGACCAC
TTCACCTTCCCCCGCCTCCTCCCCGCCGCGCCGCTCCCGCTCGCCGCCCAGCTCCACGCG
CTCCTCCTCAAGCTCAACCTCCACTCCCACGCCCACTCGCTCAACGCGCTCCTCGCCGCC
TACCTCGCCGCCGCGCGCCCCGACCTCGCCCGCGTGCTCTTCCGCACCAGCGGCGGCGGC
GCGCTCGACGTCGTGTCGTGGACGACAATGGTGGGCGGGCTGTGCAGGCTCGGCCTCGTG
GACGATGCGCGGGAGGTGTTCGATGCGATGCCCGCGAGGAACCTGGTCTCCTGGAACTCC
ATGATCTCGGGCTACGTCAAGGCCGACCGGTTCTTGGATGCGTTGGAGGTGTTCGACGAA
ATGCGGGCGCTGGGAGTGGAGGGGAACGGGTTTGTGGCGACGAGCGCGCTGGTGGCTTGC
ACGGGCGCGGGCGCGCTGGGTCGCGGTAGGGAGATATACAGGTGGGTGGAGCAGAGCGGG
ATCGAGGTGGACGCCAAGCTGGCGACGGCGGTGGTCGACATGTACTGCAAGTGCGGGTGC
GTCGACGAGGCATGGGGCGTGTTCGACTCGCTGCCGGCGAGGGGGCTCACGACGTGGAAC
TGCATGATCGGCGGGTTCGCGGTGCACGGGAGGTGCGACGACGCGCTCGAGCTATTCCAC
CAAATGGAGGCCGCAGGCGTGGCGCCCGACGACGTCACGCTGCTGAACGTGCTCACGGCG
TGCGCGCACGCCGGCGAGGTCAGCGAAGGCCGCCGCTACCTCAACCACATCGTGTCTCGC
CACGGCATCGAGCCCAAGGGAGAGCACTACGGCTGCATGGTCGACCTGTTCGGGAGAGCA
GGCCAGCTAGACGAAGCCAAGAAGGTGATCGACGAAATGCCAATGGATCCCGACCTCGCC
GTCCTCGGCGCGCTCCTCGGCGCATGCAAGATCCACGGCGACGTCGACCTCGGCGAGGCG
ATCGGGTGGCGCGTCATAGACCTCGACCCGGACAACAGCGGCCGCTACGTGCTCCTCGCA
AACCTGCTCGCCGGCGCCGGCCGGTGGGACGAGGTGGGCAAGGTCCGGCGGCTGATGGAC
GAGCGGAACGTGAGCAAGGAGGCCGGGCGGTCGGTGATCGAGGTCGACGGCGAGGCCTGC
GAGTTCCGGTGCGGGAACCTGCGCCACCCACAGGCTCGGGAGATCTACGCCATGGCCGTG
GACATGGTGAGCAGGATCCGGGCCGAGGGGTACGTGCCGGACACCGGCGAGGCGCTGCAC
GACGTCGCCGAGGAAGACAAGGAGGCGGCGCTGCTGTGCCACAGCGAGAAGCTCGCGATC
GCCTTCGGGCTGCTGCGCGCGAGGCCGCGCGAGACGCTGCGAATCACCAAGAACTTGAGA
GTTTGTAGGGATTGCCACGAGGCGACCAAGTACGTGTCTCGCGTGTTTGGGCGTGAGATC
GTGGTTAGGGACAGGAGCCGGTTCCATCATTTCAAGGATGGCATGTGTTCGTGTAAAGAT
TACTGGTAA

Peptide Sequence

PEP ID

Os06t0231400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:6796598:6798468:-1 gene:Os06g0231400 transcript:Os06t0231400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0231400-01)
Sequence

MSATTTAPSPTPIPITTIAELRQHHSQLVRLGLASHPPHARRLLAFLARDPAHLPYAARL
LAHHPDPRPALLNPLFASLPPRAAASLLALMLSLPLLPDHFTFPRLLPAAPLPLAAQLHA
LLLKLNLHSHAHSLNALLAAYLAAARPDLARVLFRTSGGGALDVVSWTTMVGGLCRLGLV
DDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVAC
TGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWN
CMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACAHAGEVSEGRRYLNHIVSR
HGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVLGALLGACKIHGDVDLGEA
IGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDERNVSKEAGRSVIEVDGEAC
EFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKEAALLCHSEKLAI
AFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVVRDRSRFHHFKDGMCSCKD
YW

Transcript Sequence

Transcript ID

Os06t0231400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:6796598:6798468:-1 gene:Os06g0231400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0231400-01)
Sequence

ATCTTCTCCAAGCTCTCGTCCTCCACCAATGTCGGCCACCACCACCGCGCCGTCCCCGAC
CCCGATCCCCATCACCACCATCGCCGAGCTGAGGCAGCACCACTCCCAGCTCGTCCGCCT
CGGCCTCGCCTCCCACCCGCCCCACGCGCGCCGCCTCCTCGCCTTCCTCGCCCGCGACCC
CGCCCACCTCCCCTACGCCGCGCGCCTCCTCGCCCACCACCCGGACCCCCGCCCCGCCCT
CCTCAACCCGCTCTTCGCCTCCCTCCCGCCGCGCGCCGCCGCGTCGCTCCTCGCCCTCAT
GCTCTCCCTCCCGCTCCTCCCCGACCACTTCACCTTCCCCCGCCTCCTCCCCGCCGCGCC
GCTCCCGCTCGCCGCCCAGCTCCACGCGCTCCTCCTCAAGCTCAACCTCCACTCCCACGC
CCACTCGCTCAACGCGCTCCTCGCCGCCTACCTCGCCGCCGCGCGCCCCGACCTCGCCCG
CGTGCTCTTCCGCACCAGCGGCGGCGGCGCGCTCGACGTCGTGTCGTGGACGACAATGGT
GGGCGGGCTGTGCAGGCTCGGCCTCGTGGACGATGCGCGGGAGGTGTTCGATGCGATGCC
CGCGAGGAACCTGGTCTCCTGGAACTCCATGATCTCGGGCTACGTCAAGGCCGACCGGTT
CTTGGATGCGTTGGAGGTGTTCGACGAAATGCGGGCGCTGGGAGTGGAGGGGAACGGGTT
TGTGGCGACGAGCGCGCTGGTGGCTTGCACGGGCGCGGGCGCGCTGGGTCGCGGTAGGGA
GATATACAGGTGGGTGGAGCAGAGCGGGATCGAGGTGGACGCCAAGCTGGCGACGGCGGT
GGTCGACATGTACTGCAAGTGCGGGTGCGTCGACGAGGCATGGGGCGTGTTCGACTCGCT
GCCGGCGAGGGGGCTCACGACGTGGAACTGCATGATCGGCGGGTTCGCGGTGCACGGGAG
GTGCGACGACGCGCTCGAGCTATTCCACCAAATGGAGGCCGCAGGCGTGGCGCCCGACGA
CGTCACGCTGCTGAACGTGCTCACGGCGTGCGCGCACGCCGGCGAGGTCAGCGAAGGCCG
CCGCTACCTCAACCACATCGTGTCTCGCCACGGCATCGAGCCCAAGGGAGAGCACTACGG
CTGCATGGTCGACCTGTTCGGGAGAGCAGGCCAGCTAGACGAAGCCAAGAAGGTGATCGA
CGAAATGCCAATGGATCCCGACCTCGCCGTCCTCGGCGCGCTCCTCGGCGCATGCAAGAT
CCACGGCGACGTCGACCTCGGCGAGGCGATCGGGTGGCGCGTCATAGACCTCGACCCGGA
CAACAGCGGCCGCTACGTGCTCCTCGCAAACCTGCTCGCCGGCGCCGGCCGGTGGGACGA
GGTGGGCAAGGTCCGGCGGCTGATGGACGAGCGGAACGTGAGCAAGGAGGCCGGGCGGTC
GGTGATCGAGGTCGACGGCGAGGCCTGCGAGTTCCGGTGCGGGAACCTGCGCCACCCACA
GGCTCGGGAGATCTACGCCATGGCCGTGGACATGGTGAGCAGGATCCGGGCCGAGGGGTA
CGTGCCGGACACCGGCGAGGCGCTGCACGACGTCGCCGAGGAAGACAAGGAGGCGGCGCT
GCTGTGCCACAGCGAGAAGCTCGCGATCGCCTTCGGGCTGCTGCGCGCGAGGCCGCGCGA
GACGCTGCGAATCACCAAGAACTTGAGAGTTTGTAGGGATTGCCACGAGGCGACCAAGTA
CGTGTCTCGCGTGTTTGGGCGTGAGATCGTGGTTAGGGACAGGAGCCGGTTCCATCATTT
CAAGGATGGCATGTGTTCGTGTAAAGATTACTGGTAAGAAAAATAGACGTGATGATGCAG
AGAAATTCTTT