Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0229800-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:6748398:6753302:1 gene:Os06g0229800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALKALI DEGENERATION description:Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain (Os06t0229800-01)
Sequence	ATGTCGTCGGCCGTCGTCGCGTCATCCACCACGTTCCTCGTCGCGCTCGCCTCTTCGGCG TCACGGGGAGGGCCCAGGAGGGGGAGGGTGGTGGGCGTGGCCGCGCCGCCGGCCCTGCTT TACGACGGCCGCGCCGGAAGGCTAGCCCTACGGGCGCCGCCTCCGCCCCGGCCTCGGCCT CGGCGTCGGGATGCGGGCGTGGTGCGCCGCGCGGATGATGGGGAGAACGAGGCGGCGGTG GAGCGGGCGGGTGAGGACGACGACGAGGAGGAGGAGTTCTCTTCGGGCGCGTGGCAGCCG CCCCGCTCGCGTCGCGGCGGCGTCGGCAAGGTCTTGAAGCGGAGGGGCACCGTCCCGCCC GTCGGCCGGTACGGCTCCGGCGGTGATGCGGCGAGAGTGCGCGGGGCGGCCGCGCCGGCG CCGGCGCCGACACAGGACGCCGCCTCAAGTAAGAACGGAGCGCTTCTCAGCGGCCGCGAC GACGACACACCTGCCTCACGGAACGGATCGGTCGTTACCGGCGCCGACAAGCCTGCCGCC GCCACGCCGCCGGTGACCATAACGAAGCTCCCAGCGCCGGACTCCCCCGTGATCCTTCCA TCCGTAGACAAGCCGCAGCCGGAGTTCGTCATCCCAGACGCGACGGCGCCGGCGCCGCCA CCGCCCGGTTCAAATCCCAGGTCGTCCGCTCCTCTCCCCAAGCCTGACAATTCGGAATTT GCAGAGGATAAGAGCGCAAAAGTTGTTGAGAGTGCTCCGAAGCCAAAGGCGACTAGATCT TCCCCTATTCCTGCGGTAGAAGAGGAGACGTGGGATTTCAAGAAATATTTTGATCTGAAC GAACCGGACGCCGCGGAGGATGGCGATGACGATGATGACTGGGCTGATTCAGATGCGTCA GATTCTGAGATCGACCAGGATGACGATTCGGGCCCTTTGGCTGGGGAGAATGTCATGAAC GTGATCGTGGTGGCTGCTGAATGTTCTCCCTGGTGCAAAACAGGTGGGCTTGGAGATGTT GCAGGTGCTTTACCCAAAGCTTTGGCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCA AGGTACGGTGATTACGCGGAAGCCCAGGATGTAGGAATCAGGAAATACTACAAGGCTGCT GGACAGGATCTGGAAGTGAAATATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTTC ATTGACGCTCCTCTCTTCCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAA ATCATGAAGCGCATGATTCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCA TGCGGTGGTGTGCCCTATGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACT GCACTCCTGCCTGTTTATCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACT CGCTCTGTCCTTGTGATACATAATATCGCTTACCAGGGCCGTGGCCCAGTAGATGAATTC CCCTACATGGAATTGCCGGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGC GGCGAGCACGCCAACATCTTCGGCGCGGGCCTGAAGATGGCGGACCGGGTGGTGACCGTG AGCCCCGGCTACCTCTGGGAGCTGAAGACGACGGAGGGCGGCTGGGGCCTCCACGACATC ATACGGGAGAACGACTGGAAGATGAACGGCATCGTGAACGGCATCGACTACCGGGAGTGG AACCCGGAGGTGGACGTGCACCTGCAGTCCGACGGCTACGCCAACTACACCGTGGCCTCG CTGGACTCCAGCAAGCCGCGGTGCAAGGCGGCGCTGCAGCGCGAGCTGGGGCTGGAGGTG CGCGACGACGTGCCGCTGATCGGGTTCATCGGGCGGCTCGACGGGCAGAAAGGTGTGGAC ATCATCGGCGACGCGATGCCGTGGATCGCCGGGCAGGACGTGCAGCTGGTGCTGCTGGGC TCCGGCCGCCGCGACCTGGAGGTGATGCTGCAGCGGTTCGAGGCGCAGCACAACAGCAAG GTGCGCGGGTGGGTGGGGTTCTCGGTGAAGATGGCGCACCGGATCACGGCGGGCGCCGAC GTGCTGGTCATGCCGTCGCGGTTCGAGCCGTGCGGCCTCAACCAGCTCTACGCCATGGCG TACGGCACCGTCCCCGTCGTGCACGCCGTCGGCGGGCTGAGGGACACCATGTCGGCGTTC GACCCGTTCGAGGACACCGGCCTCGGGTGGACGTTCGACCGCGCCGAGCCGCACAAGCTC ATCGAGGCGCTCGGCCACTGCCTCGAGACGTACCGCAAGTACAAGGAGAGCTGGAGGGGG CTCCAGGTGCGCGGCATGTCGCAGGACCTCAGCTGGGACCACGCCGCCGAGCTCTACGAG GAGGTCCTTGTCAAGGCCAAGTACCAATGGTGA

Peptide Sequence

PEP ID	Os06t0229800-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:6748398:6753302:1 gene:Os06g0229800 transcript:Os06t0229800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALKALI DEGENERATION description:Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain (Os06t0229800-01)
Sequence	MSSAVVASSTTFLVALASSASRGGPRRGRVVGVAAPPALLYDGRAGRLALRAPPPPRPRP RRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVPP VGRYGSGGDAARVRGAAAPAPAPTQDAASSKNGALLSGRDDDTPASRNGSVVTGADKPAA ATPPVTITKLPAPDSPVILPSVDKPQPEFVIPDATAPAPPPPGSNPRSSAPLPKPDNSEF AEDKSAKVVESAPKPKATRSSPIPAVEEETWDFKKYFDLNEPDAAEDGDDDDDWADSDAS DSEIDQDDDSGPLAGENVMNVIVVAAECSPWCKTGGLGDVAGALPKALARRGHRVMVVVP RYGDYAEAQDVGIRKYYKAAGQDLEVKYFHAFIDGVDFVFIDAPLFRHRQDDIYGGNRQE IMKRMILFCKAAVEVPWHVPCGGVPYGDGNLVFLANDWHTALLPVYLKAYYRDNGMMQYT RSVLVIHNIAYQGRGPVDEFPYMELPEHYLDHFKLYDPVGGEHANIFGAGLKMADRVVTV SPGYLWELKTTEGGWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVAS LDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLG SGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMA YGTVPVVHAVGGLRDTMSAFDPFEDTGLGWTFDRAEPHKLIEALGHCLETYRKYKESWRG LQVRGMSQDLSWDHAAELYEEVLVKAKYQW

Transcript Sequence

Transcript ID	Os06t0229800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:6748398:6753302:1 gene:Os06g0229800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALKALI DEGENERATION description:Soluble starch synthase II-3, Endosperm starch synthesis, Determination of the type of amylopectin structure of starch grain (Os06t0229800-01)
Sequence	GTGCCCTCCTCGCCGTCGTCGCTCGCTGCCCATTTCATCCCCCGCACGGCACGCGCGGGA CGAAAGCAAAGCACGCGCACACACTCAAACCCGCGCCTCCTCCGCTCTCGTCCGTCGCTT CGGTTCGGTTCCGGCTCGATCGGGGAGGTTCCTCGGGGCGACCATGTCGTCGGCCGTCGT CGCGTCATCCACCACGTTCCTCGTCGCGCTCGCCTCTTCGGCGTCACGGGGAGGGCCCAG GAGGGGGAGGGTGGTGGGCGTGGCCGCGCCGCCGGCCCTGCTTTACGACGGCCGCGCCGG AAGGCTAGCCCTACGGGCGCCGCCTCCGCCCCGGCCTCGGCCTCGGCGTCGGGATGCGGG CGTGGTGCGCCGCGCGGATGATGGGGAGAACGAGGCGGCGGTGGAGCGGGCGGGTGAGGA CGACGACGAGGAGGAGGAGTTCTCTTCGGGCGCGTGGCAGCCGCCCCGCTCGCGTCGCGG CGGCGTCGGCAAGGTCTTGAAGCGGAGGGGCACCGTCCCGCCCGTCGGCCGGTACGGCTC CGGCGGTGATGCGGCGAGAGTGCGCGGGGCGGCCGCGCCGGCGCCGGCGCCGACACAGGA CGCCGCCTCAAGTAAGAACGGAGCGCTTCTCAGCGGCCGCGACGACGACACACCTGCCTC ACGGAACGGATCGGTCGTTACCGGCGCCGACAAGCCTGCCGCCGCCACGCCGCCGGTGAC CATAACGAAGCTCCCAGCGCCGGACTCCCCCGTGATCCTTCCATCCGTAGACAAGCCGCA GCCGGAGTTCGTCATCCCAGACGCGACGGCGCCGGCGCCGCCACCGCCCGGTTCAAATCC CAGGTCGTCCGCTCCTCTCCCCAAGCCTGACAATTCGGAATTTGCAGAGGATAAGAGCGC AAAAGTTGTTGAGAGTGCTCCGAAGCCAAAGGCGACTAGATCTTCCCCTATTCCTGCGGT AGAAGAGGAGACGTGGGATTTCAAGAAATATTTTGATCTGAACGAACCGGACGCCGCGGA GGATGGCGATGACGATGATGACTGGGCTGATTCAGATGCGTCAGATTCTGAGATCGACCA GGATGACGATTCGGGCCCTTTGGCTGGGGAGAATGTCATGAACGTGATCGTGGTGGCTGC TGAATGTTCTCCCTGGTGCAAAACAGGTGGGCTTGGAGATGTTGCAGGTGCTTTACCCAA AGCTTTGGCGAGGAGAGGACATCGTGTTATGGTTGTGGTACCAAGGTACGGTGATTACGC GGAAGCCCAGGATGTAGGAATCAGGAAATACTACAAGGCTGCTGGACAGGATCTGGAAGT GAAATATTTCCATGCATTTATCGATGGAGTTGATTTTGTGTTCATTGACGCTCCTCTCTT CCGTCACCGTCAGGATGACATCTATGGGGGGAACAGACAGGAAATCATGAAGCGCATGAT TCTGTTTTGTAAGGCTGCTGTTGAGGTTCCTTGGCACGTTCCATGCGGTGGTGTGCCCTA TGGGGATGGCAACTTGGTGTTCCTTGCAAACGATTGGCACACTGCACTCCTGCCTGTTTA TCTGAAGGCATATTACAGAGACAATGGCATGATGCAGTACACTCGCTCTGTCCTTGTGAT ACATAATATCGCTTACCAGGGCCGTGGCCCAGTAGATGAATTCCCCTACATGGAATTGCC GGAGCACTACCTGGATCACTTCAAGCTGTACGACCCCGTCGGCGGCGAGCACGCCAACAT CTTCGGCGCGGGCCTGAAGATGGCGGACCGGGTGGTGACCGTGAGCCCCGGCTACCTCTG GGAGCTGAAGACGACGGAGGGCGGCTGGGGCCTCCACGACATCATACGGGAGAACGACTG GAAGATGAACGGCATCGTGAACGGCATCGACTACCGGGAGTGGAACCCGGAGGTGGACGT GCACCTGCAGTCCGACGGCTACGCCAACTACACCGTGGCCTCGCTGGACTCCAGCAAGCC GCGGTGCAAGGCGGCGCTGCAGCGCGAGCTGGGGCTGGAGGTGCGCGACGACGTGCCGCT GATCGGGTTCATCGGGCGGCTCGACGGGCAGAAAGGTGTGGACATCATCGGCGACGCGAT GCCGTGGATCGCCGGGCAGGACGTGCAGCTGGTGCTGCTGGGCTCCGGCCGCCGCGACCT GGAGGTGATGCTGCAGCGGTTCGAGGCGCAGCACAACAGCAAGGTGCGCGGGTGGGTGGG GTTCTCGGTGAAGATGGCGCACCGGATCACGGCGGGCGCCGACGTGCTGGTCATGCCGTC GCGGTTCGAGCCGTGCGGCCTCAACCAGCTCTACGCCATGGCGTACGGCACCGTCCCCGT CGTGCACGCCGTCGGCGGGCTGAGGGACACCATGTCGGCGTTCGACCCGTTCGAGGACAC CGGCCTCGGGTGGACGTTCGACCGCGCCGAGCCGCACAAGCTCATCGAGGCGCTCGGCCA CTGCCTCGAGACGTACCGCAAGTACAAGGAGAGCTGGAGGGGGCTCCAGGTGCGCGGCAT GTCGCAGGACCTCAGCTGGGACCACGCCGCCGAGCTCTACGAGGAGGTCCTTGTCAAGGC CAAGTACCAATGGTGAAGAGACCATGTCCGCCCGCGGTCTCCGCCTGCGCGTTCGGCAGC TATAGCTATAGCCTCCCTGAAGAAGCTTGGCGCTGCTGTGGAGGTGCGACTCGGTGGCGG TGTGGCGCCGGCGCCGGCGCTTGCAGGGGAGGTGTTTGTGCTGACCGAGCTGTGCGTTGA GGTGCGCAAATTAGCTTCCGGTTTGTGTGTTCATGGCGAGGCATGGTGGAGTTGAGGGAG TATTAAGCTTTGTTTCAGATGCATCATGCATGCGTAATAGGATGTTGTATTTAATAATGT GTTTGTTATGTCCATTGATGCGATGTTACTTCTTCATT