Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0226950-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:6589823:6591619:-1 gene:Os06g0226950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DIHYDROSPHINGOSINE C4 HYDROXYLASE 1 description:Fatty acid hydroxylase domain containing protein. (Os06t0226950-01)
Sequence

ATGGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGG
CTCTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCAC
CCCAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTC
CTCGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGAT
GAAAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATT
GCGATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAG
TTCTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGA
GCTCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCC
TTCCTCATCGCCGGCATGACTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATC
AAGACCGTCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTC
AGCAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTC
TCGCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTT
GAGAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAG
AGCAAGACCGATTAA

Peptide Sequence

PEP ID

Os06t0226950-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:6589823:6591619:-1 gene:Os06g0226950 transcript:Os06t0226950-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DIHYDROSPHINGOSINE C4 HYDROXYLASE 1 description:Fatty acid hydroxylase domain containing protein. (Os06t0226950-01)
Sequence

MAFAVSDELLGTFVPIAVYWLYSGLYIVLDAMGMDDYRLHPKGEEATKNVVSKWTVVKGV
LVQQSFQIAVSLLLFTIIGDESGTVRKQPPALVIALQFIIAMFVMDTWQYFMHRYMHVNK
FLYKHVHSKHHTLVVPYAFGALYNHPLEGLILDTIGGALSFLIAGMTPKTAIFFFSFATI
KTVDDHCGLWLPGNILHVFFSNNSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYTL
ENRKGGGFEARPIKLNVAEQSKTD

Transcript Sequence

Transcript ID

Os06t0226950-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:6589823:6591619:-1 gene:Os06g0226950 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DIHYDROSPHINGOSINE C4 HYDROXYLASE 1 description:Fatty acid hydroxylase domain containing protein. (Os06t0226950-01)
Sequence

TATCCACTCACCTCGGAGCAGCAGCACAAGAATCAAACAAAGGAGAGCCTTCTTGCGTTC
TTTGCTTCCTCCTCCTGTGTGTAGAGGATTTGAAGGAGATTTGGAGTGTCTTGAGAGGAT
GGCGTTCGCGGTGTCCGACGAGCTGCTCGGCACGTTCGTCCCGATCGCGGTGTACTGGCT
CTACTCGGGGCTGTACATCGTGCTGGACGCCATGGGGATGGACGACTACAGGCTCCACCC
CAAGGGGGAGGAGGCCACCAAGAACGTCGTCTCCAAGTGGACCGTCGTCAAGGGCGTCCT
CGTCCAGCAGTCCTTCCAGATCGCCGTCTCCCTCCTCCTCTTCACGATCATTGGTGATGA
AAGTGGTACTGTGAGGAAGCAGCCTCCGGCCCTTGTGATAGCATTGCAATTCATCATTGC
GATGTTTGTTATGGACACATGGCAATACTTCATGCACAGATATATGCATGTCAACAAGTT
CTTGTACAAGCATGTCCACTCCAAGCACCACACTCTTGTAGTCCCGTATGCCTTTGGAGC
TCTCTACAACCATCCCCTTGAGGGCCTCATCCTGGACACCATCGGCGGCGCCCTCTCCTT
CCTCATCGCCGGCATGACTCCTAAGACGGCCATATTCTTCTTCTCGTTTGCGACCATCAA
GACCGTCGATGACCACTGCGGCCTGTGGCTCCCGGGCAACATCCTCCATGTCTTCTTCAG
CAACAACAGCGCCTACCATGACATTCACCACCAGCTCTATGGCAACAAGTACAACTTCTC
GCAGCCCTTCTTTGTCATGTGGGACAAGATCCTCGGAACATACATGCCTTACACTCTTGA
GAACCGCAAGGGAGGTGGATTCGAGGCGCGCCCGATTAAGCTCAATGTGGCAGAGCAGAG
CAAGACCGATTAAGCTCAATCTAGCAGAGCAGAGTAAGGCCAATTAAGCAGTGTTCTTCC
TGCCAGTGCACAAAGCTCATGTCATGTTGTAGTATTGCCTGATTTTTCTAACTACATTTG
TGTTGGTAGTCAGTAGAAGTCTTTTTCATGTTCATATACACAAACCCTTTTGTGGGGGAT
GCCATCTTGTACCAAGGTATAGCAAATAAAGCATTGTGTT