Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0224900-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:6472173:6473641:-1 gene:Os06g0224900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitochodrial transcription termination factor-related family protein. (Os06t0224900-01);Mitochodrial transcription termination factor-related family protein. (Os06t0224900-02)
Sequence

ATGAACCACCTTCGAAACCAAATCCTTCTTCTCCGCGTCCGCTCCTCCAGCACCTCGCTC
TCTCCCCTCTCCCCTCTCCACCGCCTCTTCTCCTCCTCCACCGCCGCCGCATCCATCGCC
GCAGAACCCTTCGCCGTCGAGGACTACCTGGTCACCACCTGCGGCCTCACCGGGGACCAA
GCGCGGAAGGCGGCCAAGACTCTCTCCCGCCTCAGGTCCCCCTCCAAGCCCGACGCCGCC
GTCGCCTTCCTCTCCGGCCTCGGCCTCTCGCGCTCCGGCATCGCCGCCGCCGTGGCCGCC
GACCCGAGGTTGCTGTGCGCCGACGTGGAGAAGAACCTGGCCAAGCGCGTCGCCGAGCTC
GGTGAGCTGGGCATCTCGCGCTCCCAGATCGCGCGCCTCATCCCGCTCGCCCGTCAGTCC
TTCCGCAGCAGCTCGCTCGCCACGAACCTTGGCTTCTGGCTCCCGGTCTTGGGCTCTTTC
GAGAATGTGCTCATGGCGCTCAAGGCGAACGGAGCGATTCTTGGCTCCGACGTCGAGAAG
GTGGTCAAGCCCAACCTGGCCCTCCTCCAGCAATGTGGGATACATGTCTGCGATTTCCCC
CATACACGCCTGCCCACTGTGCTCTGCAGGCCACCCAACCATGTTCAAGAAGCTGTGGCA
CGCATCGGTGAGTTTGGCGTGCCACAGTACTCACCGGTGTTCCGCAATGCGCTTGTGCCA
TTTGCTTACCAAAACAAGGAGAAGCTCGCTGCCAAAATTGGAGTCCTTGAAATGTTTGGG
TGGTCAGAGGACGATCTCTCGATGACTATGAGGAAGGGTCCTGTCGTCATGAACATGTCT
GTGGAAAGGCTGAGGAAAAATGTGGAGTTCTTGACAAGGGATGTTAAGCTCGAGACGCGT
TACATTGCTCGAAGGCCAATCATGATCAGTTATAGCCTTGAGCGTCGGTTGTTACCCCGG
CATCGCTTGCTCAGGTTTCTCAGTGCAAAGGGATTGCTTGATGGTGAATTGGACTTCTAT
TCAGCGGTTGCATTGACTGAGAAGAAGTTTCTTGACAAGTTTGTGCATTCTTGCAAGTGT
AGCATTGCAGATCCTGCTAATGCTTATGCTTCTAGCTTTGTTGGGGATGTTCTGTGA

Peptide Sequence

PEP ID

Os06t0224900-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:6472173:6473641:-1 gene:Os06g0224900 transcript:Os06t0224900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitochodrial transcription termination factor-related family protein. (Os06t0224900-01);Mitochodrial transcription termination factor-related family protein. (Os06t0224900-02)
Sequence

MNHLRNQILLLRVRSSSTSLSPLSPLHRLFSSSTAAASIAAEPFAVEDYLVTTCGLTGDQ
ARKAAKTLSRLRSPSKPDAAVAFLSGLGLSRSGIAAAVAADPRLLCADVEKNLAKRVAEL
GELGISRSQIARLIPLARQSFRSSSLATNLGFWLPVLGSFENVLMALKANGAILGSDVEK
VVKPNLALLQQCGIHVCDFPHTRLPTVLCRPPNHVQEAVARIGEFGVPQYSPVFRNALVP
FAYQNKEKLAAKIGVLEMFGWSEDDLSMTMRKGPVVMNMSVERLRKNVEFLTRDVKLETR
YIARRPIMISYSLERRLLPRHRLLRFLSAKGLLDGELDFYSAVALTEKKFLDKFVHSCKC
SIADPANAYASSFVGDVL

Transcript Sequence

Transcript ID

Os06t0224900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:6472173:6473641:-1 gene:Os06g0224900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mitochodrial transcription termination factor-related family protein. (Os06t0224900-01);Mitochodrial transcription termination factor-related family protein. (Os06t0224900-02)
Sequence

AGTTCGCCGGCGGCGTCAAACCCTAGCGCCGCCGCCGCCGCCATGAACCACCTTCGAAAC
CAAATCCTTCTTCTCCGCGTCCGCTCCTCCAGCACCTCGCTCTCTCCCCTCTCCCCTCTC
CACCGCCTCTTCTCCTCCTCCACCGCCGCCGCATCCATCGCCGCAGAACCCTTCGCCGTC
GAGGACTACCTGGTCACCACCTGCGGCCTCACCGGGGACCAAGCGCGGAAGGCGGCCAAG
ACTCTCTCCCGCCTCAGGTCCCCCTCCAAGCCCGACGCCGCCGTCGCCTTCCTCTCCGGC
CTCGGCCTCTCGCGCTCCGGCATCGCCGCCGCCGTGGCCGCCGACCCGAGGTTGCTGTGC
GCCGACGTGGAGAAGAACCTGGCCAAGCGCGTCGCCGAGCTCGGTGAGCTGGGCATCTCG
CGCTCCCAGATCGCGCGCCTCATCCCGCTCGCCCGTCAGTCCTTCCGCAGCAGCTCGCTC
GCCACGAACCTTGGCTTCTGGCTCCCGGTCTTGGGCTCTTTCGAGAATGTGCTCATGGCG
CTCAAGGCGAACGGAGCGATTCTTGGCTCCGACGTCGAGAAGGTGGTCAAGCCCAACCTG
GCCCTCCTCCAGCAATGTGGGATACATGTCTGCGATTTCCCCCATACACGCCTGCCCACT
GTGCTCTGCAGGCCACCCAACCATGTTCAAGAAGCTGTGGCACGCATCGGTGAGTTTGGC
GTGCCACAGTACTCACCGGTGTTCCGCAATGCGCTTGTGCCATTTGCTTACCAAAACAAG
GAGAAGCTCGCTGCCAAAATTGGAGTCCTTGAAATGTTTGGGTGGTCAGAGGACGATCTC
TCGATGACTATGAGGAAGGGTCCTGTCGTCATGAACATGTCTGTGGAAAGGCTGAGGAAA
AATGTGGAGTTCTTGACAAGGGATGTTAAGCTCGAGACGCGTTACATTGCTCGAAGGCCA
ATCATGATCAGTTATAGCCTTGAGCGTCGGTTGTTACCCCGGCATCGCTTGCTCAGGTTT
CTCAGTGCAAAGGGATTGCTTGATGGTGAATTGGACTTCTATTCAGCGGTTGCATTGACT
GAGAAGAAGTTTCTTGACAAGTTTGTGCATTCTTGCAAGTGTAGCATTGCAGATCCTGCT
AATGCTTATGCTTCTAGCTTTGTTGGGGATGTTCTGTGAATTTATTGTCTGAGAGGACAA
CAGGAAAATGGGCTCATTCTTGTGCTGGGAGGGTACTGACAGGATTGTTGTGTTGGAAAG
ATCAAGGGTTTAGACTTATACTTTTGCTATCTCCTTCGTGCTCATTAAGGTTTGCTATCT
CCTTCGTCCATTGTTGCAAAATTTCTTATAACTTTGCTCTAGGTTATCTTGTGTTGGCTA
GTATCACTATTCACTGATTGATAAACAGGAACACTACAGCCTGTGGTCACCCTCTAGGTT
GATGGAATGTTGAATAACATTTCCAGGAG