Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0217300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:5952599:5963309:-1 gene:Os06g0217300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 55 description:Similar to Transcription factor MADS55. (Os06t0217300-01)
Sequence

ATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGGTGACG
TTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGTGCGAC
GCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCAGCTCC
AATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAACAGAT
AAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATGAACAA
CTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGATTGAGT
GTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGCTCTGT
ACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTCAGCTG
GCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCTTGGCG
GTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGATGACT
GCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGAAACTA
GGGTTGCCTTGA

Peptide Sequence

PEP ID

Os06t0217300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:5952599:5963309:-1 gene:Os06g0217300 transcript:Os06t0217300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 55 description:Similar to Transcription factor MADS55. (Os06t0217300-01)
Sequence

MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASS
NMNEIIDKYTTHSKNLGKTDKQPSIDLNLEHSKCSSLNEQLAEASLQLRQMRGEELEGLS
VEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLA
VPDTENVLTEDGQSSESVMTALNSGSSQDNDDGSDISLKLGLP

Transcript Sequence

Transcript ID

Os06t0217300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:5952599:5963309:-1 gene:Os06g0217300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 55 description:Similar to Transcription factor MADS55. (Os06t0217300-01)
Sequence

GTTTCTCTCTCTCCTTGTCTCTCTGTGCTGTTGTTGTTGCGGGTGAATCTGCTTGGATTT
CGTCGGAGTTTTCTGTCGCGGAGGAGGAGGGGGTGGTGGTTGATCGGAGGGGAGGGGGGA
GGGAGATGGCGAGGGAGAGGAGGGAGATACGGAGGATAGAGAGCGCGGCGGCGCGGCAGG
TGACGTTCTCGAAGCGGCGGCGGGGGCTGTTCAAGAAGGCGGAGGAGCTGGCGGTGCTGT
GCGACGCCGACGTCGCGCTCGTCGTCTTCTCCTCCACCGGCAAGCTCTCCCAGTTCGCCA
GCTCCAATATGAACGAGATCATTGACAAGTATACTACACATTCAAAGAACCTGGGGAAAA
CAGATAAGCAGCCTTCTATTGATCTGAATTTAGAGCACAGCAAGTGTAGCAGTTTGAATG
AACAACTGGCAGAAGCAAGTCTTCAACTTAGACAGATGAGAGGTGAGGAGCTTGAGGGAT
TGAGTGTGGAAGAGCTGCAGCAGATGGAAAAGAACCTCGAGGCAGGACTGCAGCGGGTGC
TCTGTACAAAGGACCAGCAATTCATGCAAGAAATCAGTGAGCTCCAACGAAAGGGCATTC
AGCTGGCAGAAGAGAATATGCGCCTCAGAGACCAAATGCCTCAGGTGCCTACTGCTGGCT
TGGCGGTTCCTGATACTGAAAATGTTCTTACTGAAGATGGACAATCATCTGAATCTGTGA
TGACTGCATTAAATTCGGGAAGCTCGCAGGATAATGATGATGGTTCTGATATATCCCTGA
AACTAGGGTTGCCTTGAAATAAAAGGACCAGCTAGAGAGCTGAGAAATGGGATGACGACC
ACCATGAATTATTTGTCTGTGTGCATGAGTGGATGAAGTTGGAAGTTAAATGCATCTTAA
GAAGATCAAGAAGATGTCATGCTATGAGATTACCAACAAGGCTGCAATAATCCTATCCTA
TGTTAAAAAGGAGATCGATTGACTTGTCATCCTATGCCTGCTGATGCAATGGTCCGGTTG
CTTGGATCTTTTTTTCTCAACTTGTACTAGTGTACCATACTACCTTCGTCGCACTTAATT
TAAATGCGACATGTACGTATGTATCGTTCGCTTAATTCGTGCAAGTTATGTACGTACCTG
TATGGGAACTGTATGGAAACTTGTGACCTCGGCTGAGACTTATTATTGGCACAATTATTA
AGCTAGTCATTCTCATC