Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0215500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:5878574:5880549:-1 gene:Os06g0215500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-OXOPHYTODIENOATE REDUCTASE 6 description:Similar to Oxo-phytodienoic acid reductase. (Os06t0215500-01)
Sequence

ATGGTGCAGCATCATCAAGCGGCGGCGAACGACGATCATCAGGCTATCCCGCTGCTGACA
CCGTACAAGCAGGCTGGGCGCCCGGGGTCGAAGCTTGACCTCTCCCACCGTGTGCTGCTC
GCGCCGATGACGCGGTGCCGATCCTACGGCAACGTGCCGCAGCCGCACGCGGCGCTGTAC
TACACGCAGCGCGCCACCCGCGGCGGCCTCCTCATCACGGAGGCCACCGGCGTCTCCGCC
ACCGCGCAGGGCTACCCGGAGACACCCGGCGTCCGGACGCGGGAGCACGTCGAGGCGTGG
AAGCCCATCGTCGACGCCGTCCACCGCAAGGGCGCCCTCTTCATCTGCCAGCTCTGGCAC
GTCGGAAGAGTCTCCAACAACGGTTTCCAGCCTGACGGATTGGCTCCCATCTCAAGCACC
GACAAGGCGATCACACCGGACGGCTATGGGATGGTGTACTCCAAGCCGCGACGGCTTCGG
ACAGACGAGATCCCGCAAATCGTCGACGATTTCAGGCTCGCTGCCAGGAACGCAGTCGAG
GCCGGGTTCGACGGTGTTGAGATCCACGGCGCGAACGGCTACCTCCTCGAGCAATTCATG
AAGGACAGCTCCAACGACCGCACCGACGAGTACGGCGGCAGCCTCGAGAACCGGTGCCGC
TTCGCCGTCGAGGTGATCGACGCCGTCGTCGGCGAGATCGGCGCCCACAGCGTCGGCATC
AGGCTGTCGCCGTTCCTGGACTACATGGACTGCGTCGACTCCGACCCGGAGGCACTCGGC
TCGTACATGGTGGAGCAGCTGAACAAGCACGAGGATTTCCTCTACTGCCACATGGTGGAG
CCTCGCATGGCCATCGTCGACGGCCGCCGGCAAATTCAGCACGGCCTCTTGCCCTTCAGG
AAGCAGTTCAATGGCACGTTCATCGCCGCCGGAGGGTACGACCGGGAAGAAGGGAACAAG
GCGGTTGCCGATGGCTATGCCGACCTCGTCGCCTATGGGAGGCTCTTCTTGGCGAATCCT
GATCTGCCCAAGAGGTTCGAGCTCGATGCGCCCATGAATAACTACGATCGCAACACCTTC
TACACGCAGGATCCTGTGGTTGGGTACACCGACTATCCTTTCCTTGACGAGCATCACCAT
GACGACGACGATGACTCTAATGCTCCTTCTGCTTAA

Peptide Sequence

PEP ID

Os06t0215500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:5878574:5880549:-1 gene:Os06g0215500 transcript:Os06t0215500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-OXOPHYTODIENOATE REDUCTASE 6 description:Similar to Oxo-phytodienoic acid reductase. (Os06t0215500-01)
Sequence

MVQHHQAAANDDHQAIPLLTPYKQAGRPGSKLDLSHRVLLAPMTRCRSYGNVPQPHAALY
YTQRATRGGLLITEATGVSATAQGYPETPGVRTREHVEAWKPIVDAVHRKGALFICQLWH
VGRVSNNGFQPDGLAPISSTDKAITPDGYGMVYSKPRRLRTDEIPQIVDDFRLAARNAVE
AGFDGVEIHGANGYLLEQFMKDSSNDRTDEYGGSLENRCRFAVEVIDAVVGEIGAHSVGI
RLSPFLDYMDCVDSDPEALGSYMVEQLNKHEDFLYCHMVEPRMAIVDGRRQIQHGLLPFR
KQFNGTFIAAGGYDREEGNKAVADGYADLVAYGRLFLANPDLPKRFELDAPMNNYDRNTF
YTQDPVVGYTDYPFLDEHHHDDDDDSNAPSA

Transcript Sequence

Transcript ID

Os06t0215500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:5878574:5880549:-1 gene:Os06g0215500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:12-OXOPHYTODIENOATE REDUCTASE 6 description:Similar to Oxo-phytodienoic acid reductase. (Os06t0215500-01)
Sequence

ACACAGCCAAAGCGTTTAGCAAGAACAGAGCAAAGAGCTAGCCTAGCTAGATCATCGCAT
CGCATTTGTTAGTTTTCCATCGCCGATTGATACATACATCATCCAAGCAGAGCAATCACC
AATCAACCGAGACAAGATGGTGCAGCATCATCAAGCGGCGGCGAACGACGATCATCAGGC
TATCCCGCTGCTGACACCGTACAAGCAGGCTGGGCGCCCGGGGTCGAAGCTTGACCTCTC
CCACCGTGTGCTGCTCGCGCCGATGACGCGGTGCCGATCCTACGGCAACGTGCCGCAGCC
GCACGCGGCGCTGTACTACACGCAGCGCGCCACCCGCGGCGGCCTCCTCATCACGGAGGC
CACCGGCGTCTCCGCCACCGCGCAGGGCTACCCGGAGACACCCGGCGTCCGGACGCGGGA
GCACGTCGAGGCGTGGAAGCCCATCGTCGACGCCGTCCACCGCAAGGGCGCCCTCTTCAT
CTGCCAGCTCTGGCACGTCGGAAGAGTCTCCAACAACGGTTTCCAGCCTGACGGATTGGC
TCCCATCTCAAGCACCGACAAGGCGATCACACCGGACGGCTATGGGATGGTGTACTCCAA
GCCGCGACGGCTTCGGACAGACGAGATCCCGCAAATCGTCGACGATTTCAGGCTCGCTGC
CAGGAACGCAGTCGAGGCCGGGTTCGACGGTGTTGAGATCCACGGCGCGAACGGCTACCT
CCTCGAGCAATTCATGAAGGACAGCTCCAACGACCGCACCGACGAGTACGGCGGCAGCCT
CGAGAACCGGTGCCGCTTCGCCGTCGAGGTGATCGACGCCGTCGTCGGCGAGATCGGCGC
CCACAGCGTCGGCATCAGGCTGTCGCCGTTCCTGGACTACATGGACTGCGTCGACTCCGA
CCCGGAGGCACTCGGCTCGTACATGGTGGAGCAGCTGAACAAGCACGAGGATTTCCTCTA
CTGCCACATGGTGGAGCCTCGCATGGCCATCGTCGACGGCCGCCGGCAAATTCAGCACGG
CCTCTTGCCCTTCAGGAAGCAGTTCAATGGCACGTTCATCGCCGCCGGAGGGTACGACCG
GGAAGAAGGGAACAAGGCGGTTGCCGATGGCTATGCCGACCTCGTCGCCTATGGGAGGCT
CTTCTTGGCGAATCCTGATCTGCCCAAGAGGTTCGAGCTCGATGCGCCCATGAATAACTA
CGATCGCAACACCTTCTACACGCAGGATCCTGTGGTTGGGTACACCGACTATCCTTTCCT
TGACGAGCATCACCATGACGACGACGATGACTCTAATGCTCCTTCTGCTTAAAACCAGTC
ATGCAACTCTTCAAATCGATCGGCATCAATAATCAATAATGCAGGCACCCGTGCTATCGA
TTTCACTATTTACCGCTACATTTTCTTTAAGTGATTTATGTACTCTTGTACTATTGTTTA
TGTTTAGTGTGAGAAGACATCAAGACATGCATCATGCGTGTATATATTTACTGGAATAAA
ACACGAGTTATATGAAC