Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0207700-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:5461149:5470876:-1 gene:Os06g0207700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 11 description:Similar to predicted protein. (Os06t0207700-01)
Sequence

ATGTCTGGCCAAGAGAGAGATGATGTTCCAATGCTAGAGCTACAAAGATTTCCTACTAGA
AGTGTATCGATGTGTATACCTGTCAGGGATGATATATATGAAGACTCAATCATATCCCAC
AGTGGTCCTATTTTCACCCCAGCACCAACTCAGTATACATCCGTGGCTATTCCATCAGGA
AACAGAGACATGCTCGATAAGCTGCCTCGTCCAAAGGTTAAGAGCAAACCACATGTTGTT
ACGCCGGAAGAAGTTGGAATAAGTAACTGGCCTTATGACCAGCATGTTCCGAAGAACAAA
CACCTGATGATGTACTCTGAGCCTCTGGGACTGTGTGATAATCCTGATTGTGTCGACTGT
CCTCGTGCTTGTAAAAACAAAAGGCATTTCCAGAGAAGTTTAGCTCCGTTTGATAACAAG
TTTCACAACATTCTTTATGGCTACGGTGATCGATGGAAGAAGAAAGCTGGGCATTACCTT
TCATACATTCCAATTATGAAGCCACATGATAAGGCTGTTCATCGGTGGAACCAGTTTTTT
GTGATATCATGCTTGCTAGCCATATTCAATGACCCTCTGTTTTTCTTCCTATTGTCAGTA
GATAAGGATTATAAGTGTATAGTGTTCAACTGGAATTTCGCGATAGCATTAGCTGTTGGA
AGAAGTGTGACTGACGCCATATATTTTTTACACATGCTTCTTCAGTTCAGGCTAGCATAT
GTAGCACCGGAGTCGAGAGTAGTGGGAACTGGAGATTTGGTTGATGAGCCTATGAAAATT
GCTATGCGCTATCTTCGTGGGTTTTTTGTACTCGACTTATTTGTTGTTCTTCCACTCCCT
CAGGTGATGATATTGCTAGTTATCCCTAAATATGTGGGATTATCAAGTGCAAACTATGCA
AAAAACTTGTTGCGTGCTACAGTTCTTCTTCAGTATGTACCACGTATTATAAGATTTGTG
CCACTGCTTGGTGGTCAATCTACAAATGGATTCATTTTTGAGTCAGCATGGTCTACTTTT
GTGATCAATCTTCTAATGTTTGTTTTGGCTGGGCATGTCGTTGGTTCATGTTGGTACCTC
TTCGGACTACAAAGGGTTAATCAATGTCTACGGGATTCTTGTGCTGCATCAAACATATCA
AAAGCGTTGTGTAATAATTGTACAGATTGTGGAATTACTGGAATAAATAGGACCAATTGG
TTGAACAACTCAGACTTAACTGGCTGTTTTGATACTAAAAGCGGTAATTTCCCTTATGGC
ATCTACCAACAGGCAGTGTTGCTAACCACAGAACCTGGACTTAAGCGTTATATATATTCG
CTCTTTTGGGGGTTTCAGCAAATTAGTACATTAGCTGGCAATTTGATCCCAAGTTACTTT
GTATGGGAAGTAATATTCACTATGGCTATTATTGGACTGGGGTTGTTGCTTTTCGCATTA
CTCATAGGGTCCATGCAGAATTTTCTCCAAGCTCTTGGAAAAAGGAGACTAGAGATGCAA
TTAAGAAGGCGTGATGTTGAACAGTGGATGAGCCATAGGCGGCTGCCAGAAGATCTGAGA
AGGAGGGTTAGATCTGCCGAGAGGTTCAGCTGGGTAGCTACTAGAGGAGTGAATGAAGAA
GAGCTTTTGAGCAATTTGCCAGAAGATATTCAAAGGGGCATACGCCGCCATTTCTTTGGG
TTCCTTAAGAAGGTCCGGCTGTTTAACCTGATGGACAATGCAACCTGGGATGCAATTTGT
GACAAGCTAAGGCAGAACTTGTATATTACAGGAAGTGATATTCTTTATCAGGGTGGTCCT
GTTGAAAAGATGGTTTTTATAGTCAGGGGTAGATTGGAAAGCATCAGTGCAGATGGAAAT
AAGTCTCCCTTGCAAGAAGGAGATGTTTGTGGTGAGGAACTCCTTTCCTGGTACTTGGAG
CAATCTTCAGTGAACCGAGATGGTGGGAAGATCAAGTTGCATGGCATGCGTTTGGTCGCC
ATACGTACTGTCAGATGTTTAACAAATGTTGAAGCTTTTGTACTGCGAGCACGTGATCTG
GAAGAAGTGACTTCACAATTTTCAAGATTCTTGCGCAATCCACTTGTGCTAGGTACAATC
AGGTATGAATCACCTTACTGGAAGAACCTTGCAGCAAATCGCATCCAAGTCGCATGGAGG
TATCGGAAAAGGCGACTGAAGAGAGCTGAGATGCAAAGGTTGCAATAG

Peptide Sequence

PEP ID

Os06t0207700-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:5461149:5470876:-1 gene:Os06g0207700 transcript:Os06t0207700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 11 description:Similar to predicted protein. (Os06t0207700-01)
Sequence

MSGQERDDVPMLELQRFPTRSVSMCIPVRDDIYEDSIISHSGPIFTPAPTQYTSVAIPSG
NRDMLDKLPRPKVKSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDNPDCVDC
PRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAGHYLSYIPIMKPHDKAVHRWNQFF
VISCLLAIFNDPLFFFLLSVDKDYKCIVFNWNFAIALAVGRSVTDAIYFLHMLLQFRLAY
VAPESRVVGTGDLVDEPMKIAMRYLRGFFVLDLFVVLPLPQVMILLVIPKYVGLSSANYA
KNLLRATVLLQYVPRIIRFVPLLGGQSTNGFIFESAWSTFVINLLMFVLAGHVVGSCWYL
FGLQRVNQCLRDSCAASNISKALCNNCTDCGITGINRTNWLNNSDLTGCFDTKSGNFPYG
IYQQAVLLTTEPGLKRYIYSLFWGFQQISTLAGNLIPSYFVWEVIFTMAIIGLGLLLFAL
LIGSMQNFLQALGKRRLEMQLRRRDVEQWMSHRRLPEDLRRRVRSAERFSWVATRGVNEE
ELLSNLPEDIQRGIRRHFFGFLKKVRLFNLMDNATWDAICDKLRQNLYITGSDILYQGGP
VEKMVFIVRGRLESISADGNKSPLQEGDVCGEELLSWYLEQSSVNRDGGKIKLHGMRLVA
IRTVRCLTNVEAFVLRARDLEEVTSQFSRFLRNPLVLGTIRYESPYWKNLAANRIQVAWR
YRKRRLKRAEMQRLQ

Transcript Sequence

Transcript ID

Os06t0207700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:5461149:5470876:-1 gene:Os06g0207700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLIC NUCLEOTIDE GATED CHANNEL 11 description:Similar to predicted protein. (Os06t0207700-01)
Sequence

GGTTATGTGAGCTGGGGATGTGAGTGACAAGGCTTCGTCCTGGATTGGTGGTTCGCTAGT
TGCTGCAGTTCTTGTTTTTTTTGGGGAATACTGGTTGCTGCAGTTCTTGCATATCCTGAT
AGTGGATGTTGGGTTCCGTGTAAGGAAATGTCTGGCCAAGAGAGAGATGATGTTCCAATG
CTAGAGCTACAAAGATTTCCTACTAGAAGTGTATCGATGTGTATACCTGTCAGGGATGAT
ATATATGAAGACTCAATCATATCCCACAGTGGTCCTATTTTCACCCCAGCACCAACTCAG
TATACATCCGTGGCTATTCCATCAGGAAACAGAGACATGCTCGATAAGCTGCCTCGTCCA
AAGGTTAAGAGCAAACCACATGTTGTTACGCCGGAAGAAGTTGGAATAAGTAACTGGCCT
TATGACCAGCATGTTCCGAAGAACAAACACCTGATGATGTACTCTGAGCCTCTGGGACTG
TGTGATAATCCTGATTGTGTCGACTGTCCTCGTGCTTGTAAAAACAAAAGGCATTTCCAG
AGAAGTTTAGCTCCGTTTGATAACAAGTTTCACAACATTCTTTATGGCTACGGTGATCGA
TGGAAGAAGAAAGCTGGGCATTACCTTTCATACATTCCAATTATGAAGCCACATGATAAG
GCTGTTCATCGGTGGAACCAGTTTTTTGTGATATCATGCTTGCTAGCCATATTCAATGAC
CCTCTGTTTTTCTTCCTATTGTCAGTAGATAAGGATTATAAGTGTATAGTGTTCAACTGG
AATTTCGCGATAGCATTAGCTGTTGGAAGAAGTGTGACTGACGCCATATATTTTTTACAC
ATGCTTCTTCAGTTCAGGCTAGCATATGTAGCACCGGAGTCGAGAGTAGTGGGAACTGGA
GATTTGGTTGATGAGCCTATGAAAATTGCTATGCGCTATCTTCGTGGGTTTTTTGTACTC
GACTTATTTGTTGTTCTTCCACTCCCTCAGGTGATGATATTGCTAGTTATCCCTAAATAT
GTGGGATTATCAAGTGCAAACTATGCAAAAAACTTGTTGCGTGCTACAGTTCTTCTTCAG
TATGTACCACGTATTATAAGATTTGTGCCACTGCTTGGTGGTCAATCTACAAATGGATTC
ATTTTTGAGTCAGCATGGTCTACTTTTGTGATCAATCTTCTAATGTTTGTTTTGGCTGGG
CATGTCGTTGGTTCATGTTGGTACCTCTTCGGACTACAAAGGGTTAATCAATGTCTACGG
GATTCTTGTGCTGCATCAAACATATCAAAAGCGTTGTGTAATAATTGTACAGATTGTGGA
ATTACTGGAATAAATAGGACCAATTGGTTGAACAACTCAGACTTAACTGGCTGTTTTGAT
ACTAAAAGCGGTAATTTCCCTTATGGCATCTACCAACAGGCAGTGTTGCTAACCACAGAA
CCTGGACTTAAGCGTTATATATATTCGCTCTTTTGGGGGTTTCAGCAAATTAGTACATTA
GCTGGCAATTTGATCCCAAGTTACTTTGTATGGGAAGTAATATTCACTATGGCTATTATT
GGACTGGGGTTGTTGCTTTTCGCATTACTCATAGGGTCCATGCAGAATTTTCTCCAAGCT
CTTGGAAAAAGGAGACTAGAGATGCAATTAAGAAGGCGTGATGTTGAACAGTGGATGAGC
CATAGGCGGCTGCCAGAAGATCTGAGAAGGAGGGTTAGATCTGCCGAGAGGTTCAGCTGG
GTAGCTACTAGAGGAGTGAATGAAGAAGAGCTTTTGAGCAATTTGCCAGAAGATATTCAA
AGGGGCATACGCCGCCATTTCTTTGGGTTCCTTAAGAAGGTCCGGCTGTTTAACCTGATG
GACAATGCAACCTGGGATGCAATTTGTGACAAGCTAAGGCAGAACTTGTATATTACAGGA
AGTGATATTCTTTATCAGGGTGGTCCTGTTGAAAAGATGGTTTTTATAGTCAGGGGTAGA
TTGGAAAGCATCAGTGCAGATGGAAATAAGTCTCCCTTGCAAGAAGGAGATGTTTGTGGT
GAGGAACTCCTTTCCTGGTACTTGGAGCAATCTTCAGTGAACCGAGATGGTGGGAAGATC
AAGTTGCATGGCATGCGTTTGGTCGCCATACGTACTGTCAGATGTTTAACAAATGTTGAA
GCTTTTGTACTGCGAGCACGTGATCTGGAAGAAGTGACTTCACAATTTTCAAGATTCTTG
CGCAATCCACTTGTGCTAGGTACAATCAGGTATGAATCACCTTACTGGAAGAACCTTGCA
GCAAATCGCATCCAAGTCGCATGGAGGTATCGGAAAAGGCGACTGAAGAGAGCTGAGATG
CAAAGGTTGCAATAGAAATCAAGTCGGCAATTTTCGGTTGTACAATCACGATCTACGGGG
TATGCATAGTCGGACGTCATATAGCGCCATGTGCACAATCGGCGTATGCATAGTTTGATA
CTTGGATGTGCATAGCGGACTTTAGCCATTCCACTATTTCTTGTGTGGGGGAAGTAGGCT
GTTAGTTTTGGTCTTGTCGGTTTTGTGCAGGTTCACTAATTTGTGTTTCCTCCCGTATAA
AATGAGATGTAGAAGACAGCCGATGTACATAAAAAGGAAAAGAAGTTCCCTAAAAACTGT
AGATGAAAAAGAAAAGTCAATTGACTAGG