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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0198700-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:5008201:5010686:1 gene:Os06g0198700 gene_biotype:protein_coding transcript_biotype:protein_coding description:CHD5-like protein domain containing protein. (Os06t0198700-01)
Sequence

ATGTCCTTGGCGGCGACCTTCGTGTTCCTCCTCGTCTCGGCGCTGCAGATGCTCGACCAA
GTCCTCGATCTCGTCAAGAAGAGGGGATCGATTACTGATGACCAGCTCAAGCTACGGCTA
GAAATCACGCAGATTCTCAAGGAGGCTAGTGCACTATCCACGCCCTCAACGTTTGCACAA
GCCGCAAAACTCAAGCGGCTGGCTGCTGCTAAAGAAAAGGAACTGGCAAAATTGCAACAG
CAGGACATCAAAGGGAAGCAGTCTTTATACAACCAATACGGACGAGTTATGTTGTTTTCC
AAGGTTCTAATCTACGGCTTGCTCATTCTGTGGTTTTGGAGTGCTCCTGTAACTACTGTT
CCCAAACATCTTCTGCAACCTTTTGGACGGATGTTTTCCTGGAGAGGTGTTGATGCTGCC
ACAGGCCGTGTTGTGGTTGGAATTATCCCATGGCTACTTTTAACCTCTCGTGTCAGCAAG
TTATTGTGCCAGAAACTTGCCCCTATATTTCTGCACCCATAG

Peptide Sequence

PEP ID

Os06t0198700-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:5008201:5010686:1 gene:Os06g0198700 transcript:Os06t0198700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:CHD5-like protein domain containing protein. (Os06t0198700-01)
Sequence

MSLAATFVFLLVSALQMLDQVLDLVKKRGSITDDQLKLRLEITQILKEASALSTPSTFAQ
AAKLKRLAAAKEKELAKLQQQDIKGKQSLYNQYGRVMLFSKVLIYGLLILWFWSAPVTTV
PKHLLQPFGRMFSWRGVDAATGRVVVGIIPWLLLTSRVSKLLCQKLAPIFLHP

Transcript Sequence

Transcript ID

Os06t0198700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:5008201:5010686:1 gene:Os06g0198700 gene_biotype:protein_coding transcript_biotype:protein_coding description:CHD5-like protein domain containing protein. (Os06t0198700-01)
Sequence

AACCCGACCACCACCGCGCCACGCCACGCCACGACACGCCGCGCCGCCGCGCCGCGCCGC
GCCGCCCGCCCCCCGCCGGCGACCATGTCCTTGGCGGCGACCTTCGTGTTCCTCCTCGTC
TCGGCGCTGCAGATGCTCGACCAAGTCCTCGATCTCGTCAAGAAGAGGGGATCGATTACT
GATGACCAGCTCAAGCTACGGCTAGAAATCACGCAGATTCTCAAGGAGGCTAGTGCACTA
TCCACGCCCTCAACGTTTGCACAAGCCGCAAAACTCAAGCGGCTGGCTGCTGCTAAAGAA
AAGGAACTGGCAAAATTGCAACAGCAGGACATCAAAGGGAAGCAGTCTTTATACAACCAA
TACGGACGAGTTATGTTGTTTTCCAAGGTTCTAATCTACGGCTTGCTCATTCTGTGGTTT
TGGAGTGCTCCTGTAACTACTGTTCCCAAACATCTTCTGCAACCTTTTGGACGGATGTTT
TCCTGGAGAGGTGTTGATGCTGCCACAGGCCGTGTTGTGGTTGGAATTATCCCATGGCTA
CTTTTAACCTCTCGTGTCAGCAAGTTATTGTGCCAGAAACTTGCCCCTATATTTCTGCAC
CCATAGCTCCTTTTGAAGAGTTCGATTTGCTCACTGTGGTTTTCAGTTTTGTTCTTACAG
TTTTAAACTGTAGACTTTCTACATGTAGCTATGCAACATCATGGTTCCTATGATGCCACT
TCCTGTAAAATTTTGTTGCGCCTATCTGCATCCACAGCTCCTTCTCATAGTGTTTCTTTT
TTTTAACCATGTTTATATTTTGCAAATTTACACACACTGCATGGCTGCCTGTGTGGCACA
TTGTGACTTCCTAAAAGAGTTACTGGTGCGACTATGCCCCTAGTTGATATATCTAGAAGA
GTATGTTGTAGTTGTAGTAGGTATATTTCTTTTGTTTAGCATTTACTTATTGCTTAGTTC
AAAAGGCTTAAGTAATGCAGTGTAAAATTCCACCCTGGTTGTGTCGGTTGGAATATGAGA
TTACAGCCCATCATCAATCTTACTGGGATTTCATTTTT