Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0193400-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:4709766:4715552:-1 gene:Os06g0193400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1 description:Similar to Helix-loop-helix protein homolog. (Os06t0193400-01);Similar to BHLH transcription factor. (Os06t0193400-02)
Sequence	ATGGACTACTCTGCTGGTTCCTACATGTGGCCTGGCAATTCAGGTTCTGAGAACTATAAT TTTGTTGACGGTTCGTCGGAATCATATGCAGAAGAAGGAAGCCTACCACCTTCAGGCTAT TTCATGGGAGCTGGATCAGATCGCAGTTTAAAGATCACGGAGAATGAAAGGAACCCCACT ATGCTTGCAAATGGATGCTTGCCATACAACACCCAGGCTCATCCATTATCTGGCCAGATT CTACCTAAGGGTGAGCTCCCTAACAATCTTCTGGATCTTCAACAGCTACAGAACAGCAGC AATCTGCGAAGCAATTCAATTCCCCCAGGGGTTCTTCAGTGCAATTCAACATCTGGAACA TTTGATGCGAAATTGGATACACCTGGTCTTGCAGAACTGCCTCATGCTTTGTCCAGTTCA ATTGATAGCAATGGTAGTGACATTTCTGCTTTTCTTGCTGATGTGCATGCCGTTTCTTCA GCCCCGACGTTGTGTTCAGCATTCCAAAACGTTTCCTCCTTCATGGAACCAGTAAATCTA GATGCTTTCGGTTTCCAAGGGGCACAAAATGTTGCTATGTTGAACAAAACAAGTCTTCCA AATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATGATAGCAAAGAG TTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCCTGCAGGCACTAGGAGCGGGT GGTTTGAAGGCTGCTCAACAGGAGCAAAATATCCGGAATATACCTCTCCCTACATTCACA TCTGGTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTTCAAAGATACCA CCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCTTCTGATGTGGAACCC CAAGCAAATTCAGCTCCTGGAAATAGTGCCAATGCGAAGCCACGTACAAGGGCTCGCCGT GGACAGGCAACTGATCCTCACAGTATTGCTGAACGGCTTCGCCGAGAGAAAATTTCAGAA AGGATGAAAAATCTCCAAGTCCTTGTCCCAAACTCCAATAAGGCAGATAAGGCATCAATG CTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGGTATTGAGCATG AGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTAGGGAATCTCAAACCGAGTGC CATAGTAATCCATCTCTATCAGCTTCAACCATTTCACAAGGGCCACCAGACATGCCAGAC TCAGAAGACAGCTCTGCCTTTGAGCAAGAGGTAGTGAAGCTGATGGAAACGAGCATCATC AGCGCGATGCAGTATCTTCAGAACAAGGGTCTCTGCCTGATGCCCATTGCTCTCGCTTCG GCCATATCCAACCAGAAAGGCATGGCTGCTGCTGCTGCAATCCCTCCTGAAAAATGA

Peptide Sequence

PEP ID	Os06t0193400-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:4709766:4715552:-1 gene:Os06g0193400 transcript:Os06t0193400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1 description:Similar to Helix-loop-helix protein homolog. (Os06t0193400-01);Similar to BHLH transcription factor. (Os06t0193400-02)
Sequence	MDYSAGSYMWPGNSGSENYNFVDGSSESYAEEGSLPPSGYFMGAGSDRSLKITENERNPT MLANGCLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSIPPGVLQCNSTSGT FDAKLDTPGLAELPHALSSSIDSNGSDISAFLADVHAVSSAPTLCSAFQNVSSFMEPVNL DAFGFQGAQNVAMLNKTSLPNGNPSLFDNAAIASLHDSKEFLNGGSIPSFGTVLQALGAG GLKAAQQEQNIRNIPLPTFTSGSHLAVTDAQGPPLPSKIPPLIHDHNSEYPINHSSDVEP QANSAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASM LDEIIDYVKFLQLQVKVLSMSRLGAPGAVLPLLRESQTECHSNPSLSASTISQGPPDMPD SEDSSAFEQEVVKLMETSIISAMQYLQNKGLCLMPIALASAISNQKGMAAAAAIPPEK

Transcript Sequence

Transcript ID	Os06t0193400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:4709766:4715552:-1 gene:Os06g0193400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PI STARVATION-INDUCED TRANSCRIPTION FACTOR-1 description:Similar to Helix-loop-helix protein homolog. (Os06t0193400-01);Similar to BHLH transcription factor. (Os06t0193400-02)
Sequence	AGAAGGGGTGTACTAGTAAACAAAACAAAAAGAATAGGTTGAGACTTTCCTGCTATCGTC AGCATTTTCAGCCCCCCTCCCCTGGGCTGGCTCTGCATCATCATTCATCATCAGCAGCAG TCAGTCCATCCAACGCGTCTTCAGTCCTCACCCGCAGCAAGAAAGCCACACTTTTCCTCC TCCTCCTCCTCCTCCTCCTCCGCCTCTTCCTCTTCCTCCCCCTTCGTTCTCCACACCCAC TCTCGGGCTGCGGCTTCTCCGGCTTCCGCGCCTCTTCCTCTGTCGGGTTAACAAAGTTAC TTTCAGCGTCAGAGGGTATTTCGTACAAAAAGGAACTGCTGTTGGTACAGGATTATCAGC TGTGAACACTTTCTGTTTCTAGAGGCCATTCTCTGTAACACTTTGGAGCATCAATTTTGT AGCGTGCTATCATGGACTACTCTGCTGGTTCCTACATGTGGCCTGGCAATTCAGGTTCTG AGAACTATAATTTTGTTGACGGTTCGTCGGAATCATATGCAGAAGAAGGAAGCCTACCAC CTTCAGGCTATTTCATGGGAGCTGGATCAGATCGCAGTTTAAAGATCACGGAGAATGAAA GGAACCCCACTATGCTTGCAAATGGATGCTTGCCATACAACACCCAGGCTCATCCATTAT CTGGCCAGATTCTACCTAAGGGTGAGCTCCCTAACAATCTTCTGGATCTTCAACAGCTAC AGAACAGCAGCAATCTGCGAAGCAATTCAATTCCCCCAGGGGTTCTTCAGTGCAATTCAA CATCTGGAACATTTGATGCGAAATTGGATACACCTGGTCTTGCAGAACTGCCTCATGCTT TGTCCAGTTCAATTGATAGCAATGGTAGTGACATTTCTGCTTTTCTTGCTGATGTGCATG CCGTTTCTTCAGCCCCGACGTTGTGTTCAGCATTCCAAAACGTTTCCTCCTTCATGGAAC CAGTAAATCTAGATGCTTTCGGTTTCCAAGGGGCACAAAATGTTGCTATGTTGAACAAAA CAAGTCTTCCAAATGGGAATCCCTCGCTGTTTGATAATGCTGCCATAGCATCACTACATG ATAGCAAAGAGTTTCTCAATGGTGGTTCCATCCCTTCGTTTGGTACTGTCCTGCAGGCAC TAGGAGCGGGTGGTTTGAAGGCTGCTCAACAGGAGCAAAATATCCGGAATATACCTCTCC CTACATTCACATCTGGTAGTCATTTGGCAGTTACTGATGCACAAGGGCCACCACTTCCTT CAAAGATACCACCATTGATCCATGACCATAATAGTGAGTACCCTATTAACCATTCTTCTG ATGTGGAACCCCAAGCAAATTCAGCTCCTGGAAATAGTGCCAATGCGAAGCCACGTACAA GGGCTCGCCGTGGACAGGCAACTGATCCTCACAGTATTGCTGAACGGCTTCGCCGAGAGA AAATTTCAGAAAGGATGAAAAATCTCCAAGTCCTTGTCCCAAACTCCAATAAGGCAGATA AGGCATCAATGCTTGATGAAATAATTGATTATGTGAAATTTCTTCAGCTTCAGGTCAAGG TATTGAGCATGAGCAGGCTAGGAGCTCCTGGAGCAGTTCTTCCCCTTCTTAGGGAATCTC AAACCGAGTGCCATAGTAATCCATCTCTATCAGCTTCAACCATTTCACAAGGGCCACCAG ACATGCCAGACTCAGAAGACAGCTCTGCCTTTGAGCAAGAGGTAGTGAAGCTGATGGAAA CGAGCATCATCAGCGCGATGCAGTATCTTCAGAACAAGGGTCTCTGCCTGATGCCCATTG CTCTCGCTTCGGCCATATCCAACCAGAAAGGCATGGCTGCTGCTGCTGCAATCCCTCCTG AAAAATGAAAAAAAAAATGAAATCGGAAAAATATGGGGGGAACAACTGCAGAAGACATAA TAACTCAACGGCTGCAGAAATGTGCTGGACACTGCAGGTTTTGTGAATGAAGTGAAATCC AATCCAGGGGGTCATAAAACATAGGAAGTTATCTGACTAATTCAGGCTTATGACACAATC TACTCTATAGTCTATAGCTATTGTGTGCCTGTTGCACATCAGTTGATGTGTATTCTTTTG TTTTTTTTGTATTGCATCCGGATGCTAATTAGGTAGTAGTGTTTCCTTTGATGTACATGA GTATTATCTATGCGGTTTTATCTAATGTGCATATAAAG