Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0192800-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:4678838:4680111:1 gene:Os06g0192800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8). (Os06t0192800-01)
Sequence	ATGTCGTCTTCGCCGCCGACGAGCGCGATGGCGGCGGGAACGTCGTCGTCGTCGGGAGGC GGATCTGGGCCGTTGGTGGTGAGCAACGGCGTGCTGCTCGCCGCGGTCATCTTCCTGTTC ATGGTCGTCGTCTTCGTCTTCCTCCTCTACCTCTACGCCAAGAGATACCTCGGCGCGAAC CCGCTGCTCGCCCCCGTCTCGCCCTCCTCCCGCTTCCTCTTCCTCGACGCCTCCCCGTTC CCGCGCCGCGGGTTGCCGGCGGCCGCGCTGCGGGCGCTGCCCGTCACGGTCTACGCGAAG CCCGCGGCGGCGCGCGGCGAGGAGGCGCTCGAGTGCGCGGTGTGCTTGTCCGAGGTGGCC GACGGCGAGAAGGTGCGGATGCTGCCCAAGTGCGACCATGGATTCCACGTCGAGTGCATC GACATGTGGTTCCATTCCCACGACACCTGCCCGCTCTGCCGCGCGCCCGTGGGGCCCGAC GCCGGCGGCGAGGGGCTGCCGCGCGTGCCGCGGGAGGAGCCGGCTGCCATGGACTTCCCC ATGTTCCCCACCAACGTCCTCTTCTGGGGCACCGCCCACGACGACGTCGCCAACGCCGGT GACCGCCACCCGTTCCACCCCCCGCCGCCGCCGCCGCCTCTCATGGCCGCGCCCTCCACG AGCTCCTCGGCGTCCGCGCGCAGGAAGGAGAGCCTCGTCATCGACATCCCGTCGCGCTCT GCCGCCGCCGCCGCGGCGGACTCCGTCACGTCGTCCTCCGCCTCGACGCCGCTGCCGGCG AGCAGGATGGCGGACGACATGAGGTCGCCGGTGTCGGCGCGGCTGCGGTCGCTGCGCCGC CTCCTCAGCAGGGGCAAGCAGGCCGTGGTCGGACCGTCCTTCAGCCCGCGCGGCGGCGGC GACATCGAGCAGGGGCTCGCCGGCGCTCCGCCGAAGACGCCCAAGACGCCGCCGCCGGCG AACTGA

Peptide Sequence

PEP ID	Os06t0192800-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:4678838:4680111:1 gene:Os06g0192800 transcript:Os06t0192800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8). (Os06t0192800-01)
Sequence	MSSSPPTSAMAAGTSSSSGGGSGPLVVSNGVLLAAVIFLFMVVVFVFLLYLYAKRYLGAN PLLAPVSPSSRFLFLDASPFPRRGLPAAALRALPVTVYAKPAAARGEEALECAVCLSEVA DGEKVRMLPKCDHGFHVECIDMWFHSHDTCPLCRAPVGPDAGGEGLPRVPREEPAAMDFP MFPTNVLFWGTAHDDVANAGDRHPFHPPPPPPPLMAAPSTSSSASARRKESLVIDIPSRS AAAAAADSVTSSSASTPLPASRMADDMRSPVSARLRSLRRLLSRGKQAVVGPSFSPRGGG DIEQGLAGAPPKTPKTPPPAN

Transcript Sequence

Transcript ID	Os06t0192800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:4678838:4680111:1 gene:Os06g0192800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8). (Os06t0192800-01)
Sequence	ACCATTACTACTTCCTCTCCTTCCTTCTCTTCTTGCCAAGCTCAAGCTGATCAAGCCAAG AAGCTAGCTAGCTATGTCGTCTTCGCCGCCGACGAGCGCGATGGCGGCGGGAACGTCGTC GTCGTCGGGAGGCGGATCTGGGCCGTTGGTGGTGAGCAACGGCGTGCTGCTCGCCGCGGT CATCTTCCTGTTCATGGTCGTCGTCTTCGTCTTCCTCCTCTACCTCTACGCCAAGAGATA CCTCGGCGCGAACCCGCTGCTCGCCCCCGTCTCGCCCTCCTCCCGCTTCCTCTTCCTCGA CGCCTCCCCGTTCCCGCGCCGCGGGTTGCCGGCGGCCGCGCTGCGGGCGCTGCCCGTCAC GGTCTACGCGAAGCCCGCGGCGGCGCGCGGCGAGGAGGCGCTCGAGTGCGCGGTGTGCTT GTCCGAGGTGGCCGACGGCGAGAAGGTGCGGATGCTGCCCAAGTGCGACCATGGATTCCA CGTCGAGTGCATCGACATGTGGTTCCATTCCCACGACACCTGCCCGCTCTGCCGCGCGCC CGTGGGGCCCGACGCCGGCGGCGAGGGGCTGCCGCGCGTGCCGCGGGAGGAGCCGGCTGC CATGGACTTCCCCATGTTCCCCACCAACGTCCTCTTCTGGGGCACCGCCCACGACGACGT CGCCAACGCCGGTGACCGCCACCCGTTCCACCCCCCGCCGCCGCCGCCGCCTCTCATGGC CGCGCCCTCCACGAGCTCCTCGGCGTCCGCGCGCAGGAAGGAGAGCCTCGTCATCGACAT CCCGTCGCGCTCTGCCGCCGCCGCCGCGGCGGACTCCGTCACGTCGTCCTCCGCCTCGAC GCCGCTGCCGGCGAGCAGGATGGCGGACGACATGAGGTCGCCGGTGTCGGCGCGGCTGCG GTCGCTGCGCCGCCTCCTCAGCAGGGGCAAGCAGGCCGTGGTCGGACCGTCCTTCAGCCC GCGCGGCGGCGGCGACATCGAGCAGGGGCTCGCCGGCGCTCCGCCGAAGACGCCCAAGAC GCCGCCGCCGGCGAACTGATCCTTCTCCCCGGAGCTCCGAGATGCATTGGCTCGCCTCGC CGATCACCGGAGCGTACACATGTGTTCATTCTTTCTTTCCTACTATTCTTTTCTGATATT TTCTTTTACATTTCAAAAAAGAAAAAAAAAGAAGAAATTTTGATGAGAAACTCTCATGTA AAAAGAAGATGACAACATTACTGTAAGTTGATTCTTGGTGATTGGGGGATAAAATTGATG AATTTGTTCAATTG