Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0186500-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:4362697:4370853:1 gene:Os06g0186500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os06t0186500-01)
Sequence	ATGAGCGGCGCGGCGCTGTGCGCGGCGCTGACGGAGCTGGGGTTCGACGGGGAGGACCCG CTGGACGCGGACGCGCTCGAGTGGCCGTTCCAGTACGAGGAGGCGCGGCCCCTCCTCGCC TGGATCTGCTCCTGCCTCCGCCCCTCCAACGTCCTCTCCCCCTCCCACCTCGCGCAGTAT GAGCAACTTGTGGAAGAGGGTAGGCTGCTAGAGGGTGAGGATTTGGACTCTGCTTTTGAT AGTATTTCAGCCTTTTCAAGCAAGAAAGATAATCAAGAGGCTGTATTTGGATCAGAAGAA ACAATCCTTGATATCCGAGAAGAAAAACTAGCATACAGAGCTGAGGTTTTTGAATTACAG AAGCAGCTTGCGCGGCAACAAGCACAGTTTGATTTGCTTGCAGGGCAAGCTTCTACTCTT ATCCAAGGCAGACGGGCACGTGTAACTGCCATGTCTGCAGTTAGTGGACAACTTATATCA TTGGATGAACAACTTTCTTCTAGAAACTTAGAGATGAATGCAGTTCTCGGAAGAATCACT GCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATGATGAAAGTATATACTTAGCA TATTCAGACTTCCACCCTTATGTTGTTGGAGACTTGGCTTGTACAAAGGAGCTGAACCGC TGGTTCTCGAAGCAATTTGAGAAGGGGCCATTTCGACTTGTTGCTGAGGAAGGGAAGTCC AAATGTTCCTGGGTTAGTCTTGACGACATCACCAATGGCTTGATAAGAGGAGATTCTGAA AAATCACATCATCACCAGCGTGTGGCTGAATTGCAACGACTTCGTTCAATATTTGCTACA AGTGAAAGACAGTGGATTGAGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTCTCG ATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCTCTT AGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAGGCT TTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAAGGCACATAT ATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGGCAA AAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATTGCT TGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAATCC GAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTAATT CAAGCTGCGACCGAGGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTCCAT GCCGTACGGGATCTCTTATGTGTTCACTCAAATGTCCAAGCAACAATGCCAACATACATG TCAGCGCATGCCTTGGTTCAGCAGATATCAGCCCTTCAATCTGATTTGCTTTCTCTTCAG TCTGAACTTGAAAGTGCTCTGCCAGCCGATCGCAAAAGATGTATCAATGAACTATGCACC CTAATTCAAACAGTGGAACAACTTCTATTTGCATCATCGACGACTGCAGAACCAATATTG ACACCTTGGCCTCTGATGCGAGCACTCGATGATATGGAAAATGCCAACGCACAAGTTGAA GTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAGATCTTTGAGAATCGC GCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAGCGA CTCAAGAATCAAGTCAGAGAGCTTACCTCCCGTGTGAAAGCTCTCCAGGAATAA

Peptide Sequence

PEP ID	Os06t0186500-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:4362697:4370853:1 gene:Os06g0186500 transcript:Os06t0186500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os06t0186500-01)
Sequence	MSGAALCAALTELGFDGEDPLDADALEWPFQYEEARPLLAWICSCLRPSNVLSPSHLAQY EQLVEEGRLLEGEDLDSAFDSISAFSSKKDNQEAVFGSEETILDIREEKLAYRAEVFELQ KQLARQQAQFDLLAGQASTLIQGRRARVTAMSAVSGQLISLDEQLSSRNLEMNAVLGRIT ATTQELAHYHSGDDESIYLAYSDFHPYVVGDLACTKELNRWFSKQFEKGPFRLVAEEGKS KCSWVSLDDITNGLIRGDSEKSHHHQRVAELQRLRSIFATSERQWIEAQVENAKQQAILS ILKSQVSSDEAHIHRDIHSLRRKGSELAGELSTLSQKVQAFVSETIPCLCSELAQLQGTY ILQGDYDLKVMRQEYYINRQKTFISHLANQLARHQFLKIACQLERKNIASAYSLLRVIES ELQSYLSAVNTRLGHCTSLIQAATEVREQGAIDDRDTLLHAVRDLLCVHSNVQATMPTYM SAHALVQQISALQSDLLSLQSELESALPADRKRCINELCTLIQTVEQLLFASSTTAEPIL TPWPLMRALDDMENANAQVEVSVEEVTKARTQKIKIFENRAHEVGRERQVFVDFFSNPER LKNQVRELTSRVKALQE

Transcript Sequence

Transcript ID	Os06t0186500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:4362697:4370853:1 gene:Os06g0186500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to predicted protein. (Os06t0186500-01)
Sequence	ACACCACCACTCGCCTCCGCTTCGCCGCCGGCCGCGCCGCCCCCAACCACCACCCCACCC ACCCACCCACCCACGCGCCGCCGCGGCTGCGGCTGCGGCCGCCGGGAGACGCGGGCGGCG GAGGTTGCCGGGCGAGAGGCAGGCGAGCGAGCGAGCTGCTGCTGGGTTTGGAATCGGGAG GAGATGAGCGGCGCGGCGCTGTGCGCGGCGCTGACGGAGCTGGGGTTCGACGGGGAGGAC CCGCTGGACGCGGACGCGCTCGAGTGGCCGTTCCAGTACGAGGAGGCGCGGCCCCTCCTC GCCTGGATCTGCTCCTGCCTCCGCCCCTCCAACGTCCTCTCCCCCTCCCACCTCGCGCAG TATGAGCAACTTGTGGAAGAGGGTAGGCTGCTAGAGGGTGAGGATTTGGACTCTGCTTTT GATAGTATTTCAGCCTTTTCAAGCAAGAAAGATAATCAAGAGGCTGTATTTGGATCAGAA GAAACAATCCTTGATATCCGAGAAGAAAAACTAGCATACAGAGCTGAGGTTTTTGAATTA CAGAAGCAGCTTGCGCGGCAACAAGCACAGTTTGATTTGCTTGCAGGGCAAGCTTCTACT CTTATCCAAGGCAGACGGGCACGTGTAACTGCCATGTCTGCAGTTAGTGGACAACTTATA TCATTGGATGAACAACTTTCTTCTAGAAACTTAGAGATGAATGCAGTTCTCGGAAGAATC ACTGCTACTACCCAGGAATTGGCCCATTATCATTCAGGAGATGATGAAAGTATATACTTA GCATATTCAGACTTCCACCCTTATGTTGTTGGAGACTTGGCTTGTACAAAGGAGCTGAAC CGCTGGTTCTCGAAGCAATTTGAGAAGGGGCCATTTCGACTTGTTGCTGAGGAAGGGAAG TCCAAATGTTCCTGGGTTAGTCTTGACGACATCACCAATGGCTTGATAAGAGGAGATTCT GAAAAATCACATCATCACCAGCGTGTGGCTGAATTGCAACGACTTCGTTCAATATTTGCT ACAAGTGAAAGACAGTGGATTGAGGCACAAGTTGAAAATGCTAAACAACAGGCCATACTC TCGATTTTAAAATCACAAGTGTCATCTGACGAGGCTCATATACATAGGGATATTCATTCT CTTAGGAGAAAAGGTTCTGAGCTTGCTGGAGAACTCTCGACTCTTTCTCAAAAAGTACAG GCTTTTGTATCTGAGACTATACCATGCCTCTGCTCAGAACTCGCTCAACTTCAAGGCACA TATATTTTGCAAGGGGACTACGATTTAAAGGTCATGCGCCAGGAATACTACATTAACAGG CAAAAAACGTTCATCAGTCACTTGGCTAATCAGCTAGCCAGACACCAGTTTCTGAAGATT GCTTGCCAGCTTGAAAGGAAAAACATAGCTAGCGCCTATTCACTGCTTAGAGTAATAGAA TCCGAGTTGCAAAGCTACCTATCAGCTGTCAATACCCGTTTGGGCCATTGTACTTCATTA ATTCAAGCTGCGACCGAGGTGCGTGAGCAAGGTGCAATTGATGACCGTGACACTCTCCTC CATGCCGTACGGGATCTCTTATGTGTTCACTCAAATGTCCAAGCAACAATGCCAACATAC ATGTCAGCGCATGCCTTGGTTCAGCAGATATCAGCCCTTCAATCTGATTTGCTTTCTCTT CAGTCTGAACTTGAAAGTGCTCTGCCAGCCGATCGCAAAAGATGTATCAATGAACTATGC ACCCTAATTCAAACAGTGGAACAACTTCTATTTGCATCATCGACGACTGCAGAACCAATA TTGACACCTTGGCCTCTGATGCGAGCACTCGATGATATGGAAAATGCCAACGCACAAGTT GAAGTTTCTGTGGAAGAAGTAACGAAGGCTCGCACCCAAAAGATAAAGATCTTTGAGAAT CGCGCTCATGAAGTTGGGAGGGAGAGGCAAGTGTTCGTCGATTTCTTCAGCAACCCCGAG CGACTCAAGAATCAAGTCAGAGAGCTTACCTCCCGTGTGAAAGCTCTCCAGGAATAAATA GATAGATAGATATCCCTCGTCTAGTTTGCATTTGTGTGCCAGGTCGTCCCGCGAAATGGG AAGCAACAGCCAAGCTCGCAATGATGCTGTTGCTTGCAAAGTTTCCCTTCCTCCAATGCG AAGTTTGGGGGAACCATCGGTTAGTTTGTTGGATGTTGAGGTGCACAGCTGCTGTTGTTA TATTTTGGGGATGCAGTCGTGATTGTTGTAAAGTAACCACGAGCCCGTTTCGTCGTCTGA TTGATATTCAGGCTAGATGGTGGTTGTACATTTGTGTACTGGTGTTGGGAGACTCGAAAA CTAGCATTGCTTAGTGTGTATATTAGATTGATCTTCAATTATTTGAACACTGCTAATGAG CCCTATATTAGATTGATCTTCAATTAAACACTAACATTTGATGCC