Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0181300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:4015962:4019316:1 gene:Os06g0181300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ANTHER INDEHISCENCE 1 description:Similar to terminal acidic SANT 1. (Os06t0181300-01)
Sequence

ATGCCGCGGCTGATGCCGGAGGACGCGTCCCTGCTCCTGGACCACGTGGTCGGCGACCCC
TCCGTCCCCGCCGCCGCCGCCAACGCGGCGCTCGCGGCGCTCCCCTTCCCGTCCCGCCCC
ACCCCGCGCCTCCTCAGGGCATCCCTCCTCCGCCGCCTCGCCGCCGACCCGGTCTCCGCC
GCCGCCCTCGACTCGCTCCAGCTCCTCGCCTCCCTCCCCTCCTCCCCTTCCCCCGCCGCC
CCCGCCGCCGCCGCCGCCGCCGCCGCCCACCTCGCCGTCGCGGCCTACCTCGCAGTCTCC
GCGCCCGACTTCGACGCCGCCGCGGGGGCCCTCTTCGGGCGCCCCGGCGGCCGCGCGCGC
CGCGCGGTCGAGGAGGGTGGGGCCGCCGCGCTCGCCTCCGACGAGGCCGATGCCGTGGCC
GACCAGTTCGAGGCCGCGGTGGGGAATTCGTTCTCGCAGACCGTGCTGAGGGGGCTCTGG
GGCGACCGGGCCGCGGCGGAGGAGCGGGTGAGGGAGCTCCTCGCCGTCGAGTGGGCGGCG
ATTGGGCAGTCCCGGCTGGAGATGGCGGCGGAGAGGATTGTTGGGGATGGCGCCATTGAG
ACATGGAGGGCCGCAGATGAGGTCACCCGAGCCAAGTATCGCTTGCTCGCTGGGGAACAA
AGAGCACGTGAAATTGAGGGCAAACTTGGAGAAACTATCCCTCAAGGAAATCAAATTTCG
ACACCAGAAGTTCATAAGGTGATGGACGCCCTTAAATCAAGCTGTGCTAACCTTCATAGT
GTAGTAGAGGACCCACTTCCAGCTGCAAAGGCAGCAGCAGATGAGGTACTGGCTGCAAGG
ATGGATAAAGCAGTCGATCTAAATGCGGGAGAAGTTAGTAATCAGCCAACGGCTTGTGAC
ATCGCTGGTCCAAGTGCTCCTGCGGACAATTTGGATGCTCCAAGGAAAGGCACAGCAGCC
AGCCTTATGGATTGGAATCCAACAGCAAGGACGTTTCAGGTATGGTAA

Peptide Sequence

PEP ID

Os06t0181300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:4015962:4019316:1 gene:Os06g0181300 transcript:Os06t0181300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ANTHER INDEHISCENCE 1 description:Similar to terminal acidic SANT 1. (Os06t0181300-01)
Sequence

MPRLMPEDASLLLDHVVGDPSVPAAAANAALAALPFPSRPTPRLLRASLLRRLAADPVSA
AALDSLQLLASLPSSPSPAAPAAAAAAAAHLAVAAYLAVSAPDFDAAAGALFGRPGGRAR
RAVEEGGAAALASDEADAVADQFEAAVGNSFSQTVLRGLWGDRAAAEERVRELLAVEWAA
IGQSRLEMAAERIVGDGAIETWRAADEVTRAKYRLLAGEQRAREIEGKLGETIPQGNQIS
TPEVHKVMDALKSSCANLHSVVEDPLPAAKAAADEVLAARMDKAVDLNAGEVSNQPTACD
IAGPSAPADNLDAPRKGTAASLMDWNPTARTFQVW

Transcript Sequence

Transcript ID

Os06t0181300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:4015962:4019316:1 gene:Os06g0181300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ANTHER INDEHISCENCE 1 description:Similar to terminal acidic SANT 1. (Os06t0181300-01)
Sequence

GAAACCATCCCAAATCTCCCGCGCCGCCGCCGCCGCCGCCGCCGCGCGCGAGCGAAACCC
AAACCAACTCGCCGGCAACGCAACGCCGGAAGGGAAGGGAAGGCGGCGAGCGATGCCGCG
GCTGATGCCGGAGGACGCGTCCCTGCTCCTGGACCACGTGGTCGGCGACCCCTCCGTCCC
CGCCGCCGCCGCCAACGCGGCGCTCGCGGCGCTCCCCTTCCCGTCCCGCCCCACCCCGCG
CCTCCTCAGGGCATCCCTCCTCCGCCGCCTCGCCGCCGACCCGGTCTCCGCCGCCGCCCT
CGACTCGCTCCAGCTCCTCGCCTCCCTCCCCTCCTCCCCTTCCCCCGCCGCCCCCGCCGC
CGCCGCCGCCGCCGCCGCCCACCTCGCCGTCGCGGCCTACCTCGCAGTCTCCGCGCCCGA
CTTCGACGCCGCCGCGGGGGCCCTCTTCGGGCGCCCCGGCGGCCGCGCGCGCCGCGCGGT
CGAGGAGGGTGGGGCCGCCGCGCTCGCCTCCGACGAGGCCGATGCCGTGGCCGACCAGTT
CGAGGCCGCGGTGGGGAATTCGTTCTCGCAGACCGTGCTGAGGGGGCTCTGGGGCGACCG
GGCCGCGGCGGAGGAGCGGGTGAGGGAGCTCCTCGCCGTCGAGTGGGCGGCGATTGGGCA
GTCCCGGCTGGAGATGGCGGCGGAGAGGATTGTTGGGGATGGCGCCATTGAGACATGGAG
GGCCGCAGATGAGGTCACCCGAGCCAAGTATCGCTTGCTCGCTGGGGAACAAAGAGCACG
TGAAATTGAGGGCAAACTTGGAGAAACTATCCCTCAAGGAAATCAAATTTCGACACCAGA
AGTTCATAAGGTGATGGACGCCCTTAAATCAAGCTGTGCTAACCTTCATAGTGTAGTAGA
GGACCCACTTCCAGCTGCAAAGGCAGCAGCAGATGAGGTACTGGCTGCAAGGATGGATAA
AGCAGTCGATCTAAATGCGGGAGAAGTTAGTAATCAGCCAACGGCTTGTGACATCGCTGG
TCCAAGTGCTCCTGCGGACAATTTGGATGCTCCAAGGAAAGGCACAGCAGCCAGCCTTAT
GGATTGGAATCCAACAGCAAGGACGTTTCAGGTATGGTAACGGCAATTGGAAAGATATTT
TAACCAACAATCCTGATGTTTTTATTGGTCGAAAAGCGATGGACTTGAAAGATAAGTGGA
GAAACATGATGAGGTAGGGATCAATGACAAGGCACCAGAGAGAGTTCTCTTTCATTCTAG
CTGAAGAACCTTTAAGAAGCCCTAGGGCATATAATTCTGGTGGTTCGATACGCTGAAGCA
CCAAGCCCTTCTACTGCTGAAGACTGAGGAGCAGTTGGGTTTGATGCATTTCTTTTTGTG
CTCCACCGACATATCCCCAGTAGATTCGGGCGAGAATTCGTCAGATTAGTACCAGATGCT
TACAAGTCATGGTTTTAAGCCCCCCTTGTAATTTGGAACAGATTCTGAATTTCTGGTGCT
GTATGTATTCATTCAGTGAGAATCTGTATCCAGCTTTTGCTGTCTATATTATCCCTACTG
TCGT