Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0180000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3966107:3969423:-1 gene:Os06g0180000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Root determined nodulation 1. (Os06t0180000-01)
Sequence

GCCTCCTTCCCCGGCGCCACCGCCTCCCGCCGCCTCGCCTCGGGCCGCCCGACGGCGGCG
GCGGCGTTCCACACCGCGGTCACCGCGTCGGGCTCCCTCTACAACACGTGGCAGTGCCGG
GTCATGTACTACTGGTTCAAGCGGGCGCGTGAGGCCGGCGGCGGCGGAGGCGCCGAGATG
GGCGGGTTCACCAGGATCCTCCACTCCGGGAAGCCCGACGCGTTCGTCGACGAGATCCCC
ACCTTCGTCGCCGACCCGCTCCCCGCTGGCACGGATCAGGGATACGTTGTTCTCAATAGA
CCTTGGGCATTTGTTCAGTGGCTTCAAAAGGCAGACATACAAGAAGAATATATCTTGATG
GCAGAACCAGATCATCTTATTGTCAAACCTATACCGAATTTATCAAGGGATGGTCGTTCA
GCAGCTTTCCCTTTCTTCTACATTGAGCCCAAAAAATATGAAAATGTGCTGCGTAAGTTC
TTCCCTGAACATGAAGGACCAATAACCAAAATTGATCCTATTGGAAATTCCCCTGTCATC
GCAAGAAAGGAATCTCTTGCAAGAATTGCTCCAACTTGGATGAATATTTCAATAGCAATG
AAGAAAGATCCTGAAACAGATAAAGCTTTTGGCTGGGTTCTTGAAATGTATGCTTATGCC
GTAGCATCCGCTCTCCATGGAGTGGGTAACATCTTACATAAGGAATTTATGATTCAGCCA
CCATGGGACTTGGAAATTGGTGATGCATTTATCATACATTATACTTATGGGTGTGACTAT
GATATGAAGGGTAAACTCACTTATGGCAAAATTGGAGAATGGAGATTTGACAAAAGATCC
TATGATAGTAAACCTCCTCCTAGAAATTTGCCATTGCCTCCAAATGGTGTACCTCAAAGC
GTGGTGACACTTGTGAAAATGGTTAATGAAGCAACAGCCAACATACCCAACTGGGATTCT
TATGCAGCTGCATAG

Peptide Sequence

PEP ID

Os06t0180000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3966107:3969423:-1 gene:Os06g0180000 transcript:Os06t0180000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Root determined nodulation 1. (Os06t0180000-01)
Sequence

ASFPGATASRRLASGRPTAAAAFHTAVTASGSLYNTWQCRVMYYWFKRAREAGGGGGAEM
GGFTRILHSGKPDAFVDEIPTFVADPLPAGTDQGYVVLNRPWAFVQWLQKADIQEEYILM
AEPDHLIVKPIPNLSRDGRSAAFPFFYIEPKKYENVLRKFFPEHEGPITKIDPIGNSPVI
ARKESLARIAPTWMNISIAMKKDPETDKAFGWVLEMYAYAVASALHGVGNILHKEFMIQP
PWDLEIGDAFIIHYTYGCDYDMKGKLTYGKIGEWRFDKRSYDSKPPPRNLPLPPNGVPQS
VVTLVKMVNEATANIPNWDSYAAA

Transcript Sequence

Transcript ID

Os06t0180000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3966107:3969423:-1 gene:Os06g0180000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Root determined nodulation 1. (Os06t0180000-01)
Sequence

GCCTCCTTCCCCGGCGCCACCGCCTCCCGCCGCCTCGCCTCGGGCCGCCCGACGGCGGCG
GCGGCGTTCCACACCGCGGTCACCGCGTCGGGCTCCCTCTACAACACGTGGCAGTGCCGG
GTCATGTACTACTGGTTCAAGCGGGCGCGTGAGGCCGGCGGCGGCGGAGGCGCCGAGATG
GGCGGGTTCACCAGGATCCTCCACTCCGGGAAGCCCGACGCGTTCGTCGACGAGATCCCC
ACCTTCGTCGCCGACCCGCTCCCCGCTGGCACGGATCAGGGATACGTTGTTCTCAATAGA
CCTTGGGCATTTGTTCAGTGGCTTCAAAAGGCAGACATACAAGAAGAATATATCTTGATG
GCAGAACCAGATCATCTTATTGTCAAACCTATACCGAATTTATCAAGGGATGGTCGTTCA
GCAGCTTTCCCTTTCTTCTACATTGAGCCCAAAAAATATGAAAATGTGCTGCGTAAGTTC
TTCCCTGAACATGAAGGACCAATAACCAAAATTGATCCTATTGGAAATTCCCCTGTCATC
GCAAGAAAGGAATCTCTTGCAAGAATTGCTCCAACTTGGATGAATATTTCAATAGCAATG
AAGAAAGATCCTGAAACAGATAAAGCTTTTGGCTGGGTTCTTGAAATGTATGCTTATGCC
GTAGCATCCGCTCTCCATGGAGTGGGTAACATCTTACATAAGGAATTTATGATTCAGCCA
CCATGGGACTTGGAAATTGGTGATGCATTTATCATACATTATACTTATGGGTGTGACTAT
GATATGAAGGGTAAACTCACTTATGGCAAAATTGGAGAATGGAGATTTGACAAAAGATCC
TATGATAGTAAACCTCCTCCTAGAAATTTGCCATTGCCTCCAAATGGTGTACCTCAAAGC
GTGGTGACACTTGTGAAAATGGTTAATGAAGCAACAGCCAACATACCCAACTGGGATTCT
TATGCAGCTGCATAGCTGATTCACCTTGTTACAATCTGATGGTTGGTTCGTCAATTGTGT
GGGCCTAATTTTCCAAGCAAAGTTAATGCATGATAACTGGCCAAGCCTAGAAGTGGGTGG
ATGACAAAGCGGGATGCATATAGCTGTACAAGTTAATCCAGGGCCATTGACACCATTCAA
TTCTGCTTGAATTTTCCAGCAGACAGAAACCAAGTTAGTGCAAAGCAACCCCTTCTTTAA
CTGAAAGTCTGAAACACACAAACTACGATCAATAAACTCAGTGTTTATTGCAATGTAAGT
GAGTGATGAGTTAGAACTGGTGAGTTCTGGTTCGGAGCCTGAATCCTGACTTCATTCTGA
TTTTCTCCTTCAGTGAAGTCAAGCATAGATTGATCTTTATACGAGACAAGTAGAAAATCA
AACACTGTAGTTGCTTTTTTTTTCCCAATTGGAGTCCACCTGTGCCAACTGCCAATGCAT
AATTAGGTTTGATGAATATTGTAACTGTGTCTCTTTTATTCTCTAAATAAAAAGGAATAT
AGCTTCTTT