Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0178500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3893624:3895446:1 gene:Os06g0178500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isopenicillin N synthase family protein. (Os06t0178500-01)
Sequence

ATGGCTGACGAGTCATGGAGGACGCCGGCGATAGTGCAAGAGCTGGCGGCGGCCGGCGTC
GAGGAGCCACCGAGTCGGTACGTGCTTGGGGAGAAAGACCGTTCTGACGAGCTGGTCGCC
GCCGAGCTGCCGGAGCCCATCCCCGTCGTTGATCTCAGCCGGCTAGCCGGCGCCGACGAG
GCTGCCAAGCTCAGGGCGGCTCTGCAGAATTGGGGCTTCTTCCTGCTTACCAACCATGGA
GTAGAAACCTCTCTGATGGATGATGTGTTGAACTTGGCAAGAGAGTTCTTCAACCAACCG
ATCGAACGGAAGCGAAAATTCAGCAACTTGATCGACGGCAAGAACTTCCAGGTGGAAGGG
TATGGAACTGACCGGGTGGTAACCCAAGATCAGATCCTGGACTGGTCTGATCGGCTGTTT
CTCAGAGTTGAACCCAAGGAGGAGCGAAATCTTGCCTTCTGGCCTGACCATCCTGAATCT
TTCAGGGATGTTCTGAACGAGTACGCATCAAGAACCAAAAGAATAAGAGACGATATCGTT
CAGGCTATGTCCAAGCTTCTTGGGCTTGATGAGGATTACTTCTTCGACCGACTCAACAAA
GCTCCTGCACTTGCAAGATTCAACTACTACCCTCCCTGTCCAAGGCCTGACCTTGTGTTC
GGCGTCAGGCCTCACTCCGACGGCTCCCTCTTTACGATTCTTCTCGTCGACGAAGATGTC
GGTGGCCTGCAAATTCAGAGGGATGGCAAGTGGTACAATGTTCAGGTCACTCCCAACACA
TTGCTGATCAACTTAGGTGACACCATGGAGGTATTGTGCAATGGCATCTTCAGGAGCCCA
GTGCACAGGGTGGTGACAAACGCCGAGAGGGAGAGGATCTCACTGGCCATGTTTTACAGT
GTGAATGATGAGAAAGATATTGGGCCGGCGGCTGGTTTGCTGGATGAGAATCGGCCTGCA
AGATACAGGAAAGTGAGCGTCGGAGAGTTCAGGGCTGGGATCATTGGAAAATTCTCTCGA
CGAGAGAGATACATCGACTCCCTGAAGATCTGA

Peptide Sequence

PEP ID

Os06t0178500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3893624:3895446:1 gene:Os06g0178500 transcript:Os06t0178500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isopenicillin N synthase family protein. (Os06t0178500-01)
Sequence

MADESWRTPAIVQELAAAGVEEPPSRYVLGEKDRSDELVAAELPEPIPVVDLSRLAGADE
AAKLRAALQNWGFFLLTNHGVETSLMDDVLNLAREFFNQPIERKRKFSNLIDGKNFQVEG
YGTDRVVTQDQILDWSDRLFLRVEPKEERNLAFWPDHPESFRDVLNEYASRTKRIRDDIV
QAMSKLLGLDEDYFFDRLNKAPALARFNYYPPCPRPDLVFGVRPHSDGSLFTILLVDEDV
GGLQIQRDGKWYNVQVTPNTLLINLGDTMEVLCNGIFRSPVHRVVTNAERERISLAMFYS
VNDEKDIGPAAGLLDENRPARYRKVSVGEFRAGIIGKFSRRERYIDSLKI

Transcript Sequence

Transcript ID

Os06t0178500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3893624:3895446:1 gene:Os06g0178500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isopenicillin N synthase family protein. (Os06t0178500-01)
Sequence

AGGCAAGAAGAAAATTAAGCAAAGAAAGATCCAAGAACAAGAACACTAATGGCTGACGAG
TCATGGAGGACGCCGGCGATAGTGCAAGAGCTGGCGGCGGCCGGCGTCGAGGAGCCACCG
AGTCGGTACGTGCTTGGGGAGAAAGACCGTTCTGACGAGCTGGTCGCCGCCGAGCTGCCG
GAGCCCATCCCCGTCGTTGATCTCAGCCGGCTAGCCGGCGCCGACGAGGCTGCCAAGCTC
AGGGCGGCTCTGCAGAATTGGGGCTTCTTCCTGCTTACCAACCATGGAGTAGAAACCTCT
CTGATGGATGATGTGTTGAACTTGGCAAGAGAGTTCTTCAACCAACCGATCGAACGGAAG
CGAAAATTCAGCAACTTGATCGACGGCAAGAACTTCCAGGTGGAAGGGTATGGAACTGAC
CGGGTGGTAACCCAAGATCAGATCCTGGACTGGTCTGATCGGCTGTTTCTCAGAGTTGAA
CCCAAGGAGGAGCGAAATCTTGCCTTCTGGCCTGACCATCCTGAATCTTTCAGGGATGTT
CTGAACGAGTACGCATCAAGAACCAAAAGAATAAGAGACGATATCGTTCAGGCTATGTCC
AAGCTTCTTGGGCTTGATGAGGATTACTTCTTCGACCGACTCAACAAAGCTCCTGCACTT
GCAAGATTCAACTACTACCCTCCCTGTCCAAGGCCTGACCTTGTGTTCGGCGTCAGGCCT
CACTCCGACGGCTCCCTCTTTACGATTCTTCTCGTCGACGAAGATGTCGGTGGCCTGCAA
ATTCAGAGGGATGGCAAGTGGTACAATGTTCAGGTCACTCCCAACACATTGCTGATCAAC
TTAGGTGACACCATGGAGGTATTGTGCAATGGCATCTTCAGGAGCCCAGTGCACAGGGTG
GTGACAAACGCCGAGAGGGAGAGGATCTCACTGGCCATGTTTTACAGTGTGAATGATGAG
AAAGATATTGGGCCGGCGGCTGGTTTGCTGGATGAGAATCGGCCTGCAAGATACAGGAAA
GTGAGCGTCGGAGAGTTCAGGGCTGGGATCATTGGAAAATTCTCTCGACGAGAGAGATAC
ATCGACTCCCTGAAGATCTGATTTGTACTAGTAGCATGATTGTTGCAAGCTCAGCAGCTT
TCAGTAGCAAGTATTCCTGGGAAAATAAATATGTTTTTTTCCTTGAGGGAATTGCTAAAA
GCATGTCGCAAGTTTTTTTTAACAAAAAACTTTCAAATGTAACTATAATATTATTAATGG
TATTGTAATTAGACATTATTAATATTATAGTGTTATTATATTGTAATTATTGTATAATTG
TAATGTAATTACACTATTAACTACATTGGATATGTTTTTTTTCCTACTTTTATCGATATA
GCCATATTAGT