Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0174400-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:3773690:3776480:-1 gene:Os06g0174400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111 description:Similar to Vesicle-associated membrane protein 712 (AtVAMP712). (Os06t0174400-01)
Sequence	ATGGCGATCCTGTACGCGGTGGTGGCGCGCGGGACGGTGGTGCTGGCGGAGCACAGCGCG GCGGCGACCAACGCGGGCGCCGTGGCGCGGCAGGTCCTCGAGCGCCTCCCCGGCGGGGGA GCCGACAGCCACGTCTCCTACACGCAGGACCGCTACGTCTTCCACGCCAAGCGCACCGAC GGCATCACCGCGCTCTGCATGGCCGACGAGGCCGCCGGACGGCGAATCCCCTTTGCGTTC CTTGAGGATATCCATGGAAGGTTCGTGAAGACATATGGCCGTGCTGCATTGACATCCCTT GCTTATGGCATGAATGATGAGTTCTCGAGGGTCTTGAGTCAGCAAATGGATTACTATTCG AATGACCCAAACGCAGACAGAATAAATCGTATGAGGGGTGAAATCAGTCAGGTCCGTACT GTTATGATTGACAATATTGATAAAGTCCTTGAAAGAGGTGATCGTTTGGACATGTTGGTC GACAAGACTGCAAATATGCAAGGAAATACAATTCGTTTTAAACGACAAGCTCGCCGCTTC AGAAATACCACCTGGTGGAGAAATGTTAAACTCACGATTGCGTTGATATTCCTCCTCACG GTAATAATATACGTTGTGCTCGTCTTTATGTGCCATGGCTTCACCTTGCCTACTTGTATT AGGTGA

Peptide Sequence

PEP ID	Os06t0174400-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:3773690:3776480:-1 gene:Os06g0174400 transcript:Os06t0174400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111 description:Similar to Vesicle-associated membrane protein 712 (AtVAMP712). (Os06t0174400-01)
Sequence	MAILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTD GITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQQMDYYS NDPNADRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQARRF RNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGFTLPTCIR

Transcript Sequence

Transcript ID	Os06t0174400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:3773690:3776480:-1 gene:Os06g0174400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111 description:Similar to Vesicle-associated membrane protein 712 (AtVAMP712). (Os06t0174400-01)
Sequence	TTTAATTTTTCCTTCTTTTCTTCTAATTATTATTAGTACTAATTCAACCTCCCCCTCGCC GCCGTCCTCCTCCTCCTCCTCCGCGTCCGCACGGCAGCCGGAGGCGGGAGGCGAGGCGAG GCGAGGCGCGCGGCGGAGATGGCGATCCTGTACGCGGTGGTGGCGCGCGGGACGGTGGTG CTGGCGGAGCACAGCGCGGCGGCGACCAACGCGGGCGCCGTGGCGCGGCAGGTCCTCGAG CGCCTCCCCGGCGGGGGAGCCGACAGCCACGTCTCCTACACGCAGGACCGCTACGTCTTC CACGCCAAGCGCACCGACGGCATCACCGCGCTCTGCATGGCCGACGAGGCCGCCGGACGG CGAATCCCCTTTGCGTTCCTTGAGGATATCCATGGAAGGTTCGTGAAGACATATGGCCGT GCTGCATTGACATCCCTTGCTTATGGCATGAATGATGAGTTCTCGAGGGTCTTGAGTCAG CAAATGGATTACTATTCGAATGACCCAAACGCAGACAGAATAAATCGTATGAGGGGTGAA ATCAGTCAGGTCCGTACTGTTATGATTGACAATATTGATAAAGTCCTTGAAAGAGGTGAT CGTTTGGACATGTTGGTCGACAAGACTGCAAATATGCAAGGAAATACAATTCGTTTTAAA CGACAAGCTCGCCGCTTCAGAAATACCACCTGGTGGAGAAATGTTAAACTCACGATTGCG TTGATATTCCTCCTCACGGTAATAATATACGTTGTGCTCGTCTTTATGTGCCATGGCTTC ACCTTGCCTACTTGTATTAGGTGAGATGCCATCCATGTCTTTGTGTGGTGTGCTGGTGAG TGCTGCTGAACTATTGCAACACCATTGCAATAGGTCAGGGTGGTTTTTGTGTAGAGATTA CTATTTATTGTGTAATCATGCTGTGTTGATTGTGCAAACTCAATGAAAGATGTAATCTTT GCCCCCCATAAATCCGCCTATTTGGAGCTGTACGACCATGGGAATTCTACTATTACTCTA TCAATATTCTTCGCTGCTGCTGCAGCTGCGTCTGC