Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0172000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3640786:3643222:1 gene:Os06g0172000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0172000-01)
Sequence

ATGGCCGCCGCGCCGGTGGCCTCCCCATTCCCGGCGCTTCCCTCCTCCTCCTCCTCCACC
ACCATCGCGGCCTCCACCGCCGCGCGCCGGTGCCACGACGCGCTGCTCCCACCGCCAGCC
GCCGCGGGGCGCGAGCCGGCTCGCACCAGGGGATCCTCCTCCTCCTTGGCTGGCGCCGCG
GGGGAGAGGAGGAGGCGGCGAGGCGAGGAGGATGGCGGCGAGGTCGAGGCCGAGGCGGAG
CGGCGGCGAAAGGAGGAAGTGAACCGTAAGATCGCGTCCCGGAAGGCGCTCTCCGTCATC
CTCCGCCGCGAGGCCACCAAGGCCGTCCTCGACAAGCGCAAGCCCGGCAAGGGCACCCGC
CGCCTCCTCCCCCGCACCGTCCTCGAGGCCCTCCACGAGCGCATCACCGCCCTCCGCTGG
GACTCCGCCCTCAAGGTGTTCGATCTAATGCGCGACCAGGTGTGGTACAGGCCGTACGTC
GGGATATACGTCAAGCTGATCACCATGCTGGGCAAGTGCAAGCAGCCGGAGAGGGCGCAC
GAGCTGTTCCAGGCCATGGTGGACGAAGGCTGCGCTCCCAACCTCGAGTCCTACACGGCC
CTCGTCTCCGCGTACAGCAGGAGTGGCCGCTTCGACAGGGCCTTCTCCTTGCTCGAGCAG
ATGAAGGCCACCCCTGGTTGCCGACCTGATGTGCAGACCTACTCCATTCTCATCAAGTCA
TGCTTGCACGCCTATGATTTTGAGCGGGTCAAGTATTTGATGGAAGATATGGCGCGGGCG
GGTATCCGTCCCAATGTCGTGACTTATAACACATTAATTGATGCCTATGGGAAAGCAGGA
AGGTTTGCTGAGATGGAATCAACTCTTCTGGAGATGCTGACTGAAAATTGCAAGCCTGAT
GTATGGACAATGAATTCTACTCTCAGAGCTTTCGGTGGCAGTGGTCAAATTGAAACTATG
GAAAGCTGTTATGAGAAGTTCCAGGCCTCCGGTATCTCCCCAAACATTAAGACTTACAAT
ATTTTACTTGATTCCTATGGTAAAGCTAAAATGTATGAGAAGATGGGAGCTGTGATGGAA
TACATGCAGAAGTATTACTATTCTTGGACAATAGTCACATACAATGTAGTTATTGATGCA
TTTGGAAGGGCTGGGGACCTTGAACAGATGGAATATATTTTTAGATTGATGAAATCTGAG
CGTATAAAGCCCAACTGTGTTACACTCTGCTCGTTGGTTCGAGCATATGGAAGGGCTGGG
GATGTTAAGAAAATAAAGACAGTGTTGAGAATCGTTGAGAATTCTGACATAACGTTGGAT
ATTGTGTTCTTCAACTGTTTGGTGGACGCGTTTGGGAGGGTGGGGTGCTTGGCGGAGATG
TGGGATGTTCTTGATATAATGAAATTACAACGATGCAAACCAGACAAGGTAACCTGCACT
ACCATGATTAAATGGTTTCTCATCAAAGGAATTGATGATCATCGTGTTCAGTACCTACGG
GACTTAAAAGACGGGCGATCTAAAGATAACATATAG

Peptide Sequence

PEP ID

Os06t0172000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3640786:3643222:1 gene:Os06g0172000 transcript:Os06t0172000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0172000-01)
Sequence

MAAAPVASPFPALPSSSSSTTIAASTAARRCHDALLPPPAAAGREPARTRGSSSSLAGAA
GERRRRRGEEDGGEVEAEAERRRKEEVNRKIASRKALSVILRREATKAVLDKRKPGKGTR
RLLPRTVLEALHERITALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAH
ELFQAMVDEGCAPNLESYTALVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKS
CLHAYDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPD
VWTMNSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVME
YMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAG
DVKKIKTVLRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCT
TMIKWFLIKGIDDHRVQYLRDLKDGRSKDNI

Transcript Sequence

Transcript ID

Os06t0172000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3640786:3643222:1 gene:Os06g0172000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0172000-01)
Sequence

GCGCGGACGAAAAATCGCGCCGCTCTCCGGCGCAAAACTGCAGCGAGGCGAGCTCGCCCT
CGCCTCCGGCTACTCCGAGCCGCGCCGCAATGGCCGCCGCGCCGGTGGCCTCCCCATTCC
CGGCGCTTCCCTCCTCCTCCTCCTCCACCACCATCGCGGCCTCCACCGCCGCGCGCCGGT
GCCACGACGCGCTGCTCCCACCGCCAGCCGCCGCGGGGCGCGAGCCGGCTCGCACCAGGG
GATCCTCCTCCTCCTTGGCTGGCGCCGCGGGGGAGAGGAGGAGGCGGCGAGGCGAGGAGG
ATGGCGGCGAGGTCGAGGCCGAGGCGGAGCGGCGGCGAAAGGAGGAAGTGAACCGTAAGA
TCGCGTCCCGGAAGGCGCTCTCCGTCATCCTCCGCCGCGAGGCCACCAAGGCCGTCCTCG
ACAAGCGCAAGCCCGGCAAGGGCACCCGCCGCCTCCTCCCCCGCACCGTCCTCGAGGCCC
TCCACGAGCGCATCACCGCCCTCCGCTGGGACTCCGCCCTCAAGGTGTTCGATCTAATGC
GCGACCAGGTGTGGTACAGGCCGTACGTCGGGATATACGTCAAGCTGATCACCATGCTGG
GCAAGTGCAAGCAGCCGGAGAGGGCGCACGAGCTGTTCCAGGCCATGGTGGACGAAGGCT
GCGCTCCCAACCTCGAGTCCTACACGGCCCTCGTCTCCGCGTACAGCAGGAGTGGCCGCT
TCGACAGGGCCTTCTCCTTGCTCGAGCAGATGAAGGCCACCCCTGGTTGCCGACCTGATG
TGCAGACCTACTCCATTCTCATCAAGTCATGCTTGCACGCCTATGATTTTGAGCGGGTCA
AGTATTTGATGGAAGATATGGCGCGGGCGGGTATCCGTCCCAATGTCGTGACTTATAACA
CATTAATTGATGCCTATGGGAAAGCAGGAAGGTTTGCTGAGATGGAATCAACTCTTCTGG
AGATGCTGACTGAAAATTGCAAGCCTGATGTATGGACAATGAATTCTACTCTCAGAGCTT
TCGGTGGCAGTGGTCAAATTGAAACTATGGAAAGCTGTTATGAGAAGTTCCAGGCCTCCG
GTATCTCCCCAAACATTAAGACTTACAATATTTTACTTGATTCCTATGGTAAAGCTAAAA
TGTATGAGAAGATGGGAGCTGTGATGGAATACATGCAGAAGTATTACTATTCTTGGACAA
TAGTCACATACAATGTAGTTATTGATGCATTTGGAAGGGCTGGGGACCTTGAACAGATGG
AATATATTTTTAGATTGATGAAATCTGAGCGTATAAAGCCCAACTGTGTTACACTCTGCT
CGTTGGTTCGAGCATATGGAAGGGCTGGGGATGTTAAGAAAATAAAGACAGTGTTGAGAA
TCGTTGAGAATTCTGACATAACGTTGGATATTGTGTTCTTCAACTGTTTGGTGGACGCGT
TTGGGAGGGTGGGGTGCTTGGCGGAGATGTGGGATGTTCTTGATATAATGAAATTACAAC
GATGCAAACCAGACAAGGTAACCTGCACTACCATGATTAAATGGTTTCTCATCAAAGGAA
TTGATGATCATCGTGTTCAGTACCTACGGGACTTAAAAGACGGGCGATCTAAAGATAACA
TATAGGCACTAACACTAAGCAGACAATGTCAGAACTTCAGTTTGCAAGATGGAACAACCT
GTCAGAACACTAAGCAGACAATGGTGATATTTGTTCTCCGTAATTTTCCAAGAAAGATGG
AACAACCTGTAAGAACTCCAGTTAGCAGAGACACATCAATCTTAGCCTGCTCTTTGTAGG
TAGCTTCATTGTTACTTATTCAACATGTAATGTACACAACACAACAATGAAAGTTTGTTT
TACGATCTTAACAATGGAGCTATTTGACTGCATCTGGCAAAACTGCCTATGGTTATGGCA
TCCCATAAATGAATTATGTCTTGAGGATCTGAGCAAGATTTTGCTATCCGAGCAAACGGA
TCAGGACAATGAAATAAAGAAGAAGGCCTTGACGAACAGTGAATCTTAAGTGTCGGTGAC
CAATCAGTTAGATTGTGCTGTGCTGTTGTGACTTGATGTATGGATCATACAGCTGTACAT
GATATTCAGTATTGACTCGTGC