Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0168600-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:3449701:3454747:-1 gene:Os06g0168600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIRESCENT 3 description:Ribonucleotide reductase, Chloroplast biogenesis (Os06t0168600-01)
Sequence	ATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCACTTCGACAAGATCACGGCG CGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGCGACCCGGTGCTCGTCGCG CAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGCCAGCTCGACGAGCTCGCT GCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTACGCCTCGCTCGCGGCGAGG ATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTCTCGGAGACGATTAAGGAC ATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCTTTGGTTGCCCACGATGTA TATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAGATAATTTATGATAGGGAC TTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTTGGC GGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTAGGTATACACAAG GATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCTCAGCGCTGGTTTACTCAT GCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAATTAAGCAGCTGTTTCCTT ATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTC ATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTGGGAGC TATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAAT GATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAGGGTGCATTTGCTGTGTAC TTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTGAGAAAGAATCATGGGAAG GAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTTCCTGATCTATTCATGCAA AGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAATGAAGCTCCAGGGTTAGCT GATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATATGAGAGAGAGGGCAAGGCA AAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACT GGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAAAGTAACCAGCAGAATTTG GGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAGTACACAAGCCCTACTGAA ACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTTGTAAGGGAAAAGGGTGTC CCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGATTCTAAAAATAGATATTTT GACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATACAATCTCAACAAAATAATT GATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAATATGCGGCACAGGCCAATT GGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTTGGCATGCCATTTGATTCA CCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATTTACTTTCATTCTCTGAAA GCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACATATGAAGGGAGCCCTGTC AGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCATCTGACAGATGGAACTGG CCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAACTCTCTTCTTGTTGCTCCA ATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACA TCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTTGTGGTTAACAAGCATCTT CTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTAT GAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGATCTAAAAGCAATTTACAAA ACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCTGTTGATCGTGGATGCTAC ATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACT TCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGGATGTATTATCTACGAACA CGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCCCTTTTGAAGGCCAATGGA GAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCTAAAATGGCTCAAATGGTT TGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAGTTAG

Peptide Sequence

PEP ID	Os06t0168600-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:3449701:3454747:-1 gene:Os06g0168600 transcript:Os06t0168600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIRESCENT 3 description:Ribonucleotide reductase, Chloroplast biogenesis (Os06t0168600-01)
Sequence	MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA AETAAAMTASHPDYASLAARIAVSNLHKNTKKSFSETIKDMYGHFNERSGLNAPLVAHDV YEVIMKNASRLDSEIIYDRDFDYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHK DDIESAIKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV ISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVY LEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFCPNEAPGLA DCWGDEFEKLYTKYEREGKAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNL GTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGSSDSKNRYF DFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFILLGMPFDS PEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNVVPSDRWNW PSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHL LHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVDMAVDRGCY IDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVDTALLKANG ENGTKAAEEEDVEAKMAQMVCSLNNREECLACGS

Transcript Sequence

Transcript ID	Os06t0168600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:3449701:3454747:-1 gene:Os06g0168600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VIRESCENT 3 description:Ribonucleotide reductase, Chloroplast biogenesis (Os06t0168600-01)
Sequence	GCGCGCCAAACTTGCTCCAAATCGAAGTATTATTTTCTCTCGCGATTTCTCCGATTTTTT TTTCTAGCGATAAATTAATTAATGCTCCTCTCGCCGCGCCGGGAAAGCATTTAAATCTCC CCCTCCTCCGCGCGGTTCTCCCAACCCAAACCCTACCACGATTCCTCCCCACTCCCAATC CAATCGCCGCGGCGGAGGCGGCGGGCGCGCGTGCACACCAGGTGTTCGACGGAAGGCCTC GCCGGGTGGGGGGCGAAGATGTACGTGGTGAAGCGGGACGGGCGGCAGGAGACGGTGCAC TTCGACAAGATCACGGCGCGGCTGAAGAAGCTCAGCTACGGCCTCAGCCAGGAGCACTGC GACCCGGTGCTCGTCGCGCAGAAGGTATGCGCGGGTGTGTACAAGGGCGTCACCACCAGC CAGCTCGACGAGCTCGCTGCCGAGACTGCCGCCGCCATGACCGCGTCCCACCCCGACTAC GCCTCGCTCGCGGCGAGGATTGCGGTTTCCAACCTGCACAAGAACACCAAGAAGTCCTTC TCGGAGACGATTAAGGACATGTATGGACATTTCAACGAGAGATCTGGGCTGAATGCTCCT TTGGTTGCCCACGATGTATATGAAGTCATCATGAAGAATGCTTCTCGCTTGGACAGCGAG ATAATTTATGATAGGGACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCT TACCTCCTGAAACTTGGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTT TCAGTAGGTATACACAAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTGATGTCT CAGCGCTGGTTTACTCATGCTTCACCGACCCTTTTCAATGCTGGCACTCCAAGGCCCCAA TTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACT TTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAATTGGTGTATCAGTTCACAAT ATTCGAGCTACTGGGAGCTATATCCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCT ATGCTACGTGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGAGGCAAGAGAAAG GGTGCATTTGCTGTGTACTTGGAGCCTTGGCATGCGGATATTTTTGAGTTCCTTGATCTG AGAAAGAATCATGGGAAGGAGGAGCATCGTGCAAGGGATCTTTTCTATGCACTCTGGGTT CCTGATCTATTCATGCAAAGAGTCCAAAATAACCAAGAATGGTCATTGTTTTGTCCCAAT GAAGCTCCAGGGTTAGCTGATTGCTGGGGTGATGAGTTTGAGAAACTGTACACAAAATAT GAGAGAGAGGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTA AAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAGGATACATGCAATAGGAAA AGTAACCAGCAGAATTTGGGCACAATTAAATCTTCAAACTTATGCACTGAGATAATTGAG TACACAAGCCCTACTGAAACTGCTGTCTGCAATCTGGCATCTATTGCTTTACCACGTTTT GTAAGGGAAAAGGGTGTCCCCATAGAGTCCCATCCATCTAAACTTGTCGGGAGCAGTGAT TCTAAAAATAGATATTTTGACTTTGACAAGCTTGCTGAGGTTACTTCAACTGTCACATAC AATCTCAACAAAATAATTGATATTAATTATTACCCTGTTGAAACCGCAAAAAGATCAAAT ATGCGGCACAGGCCAATTGGCATTGGTGTTCAAGGGTTGGCAGATACTTTCATATTACTT GGCATGCCATTTGATTCACCAGAGGCTCAGCAATTGAATAAGGATATCTTCGAAACTATT TACTTTCATTCTCTGAAAGCTTCCGCTGAGCTTGCTGGTAAAGAAGGTCCCTATGAAACA TATGAAGGGAGCCCTGTCAGCAAGGGCATTCTCCAACCTGATATGTGGAATGTAGTTCCA TCTGACAGATGGAACTGGCCATCTCTACGGAGTACTATTTCTAAAGTTGGATTAAGAAAC TCTCTTCTTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAA TGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGTGGGGAGTTTGTT GTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTG AAAAATAAGATAATTTATGAAGATGGTTCTGTTCAAAAGATGACAGTGATCCCAGATGAT CTAAAAGCAATTTACAAAACGGTTTGGGAGATAAAGCAGAAAACGCTTGTTGACATGGCT GTTGATCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCA AACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGGGCCTGAAAACTGGG ATGTATTATCTACGAACACGAGCAGCTGCTGACGCAATCAAGTTCACAGTTGATACTGCC CTTTTGAAGGCCAATGGAGAAAACGGCACCAAGGCTGCAGAGGAAGAGGACGTGGAAGCT AAAATGGCTCAAATGGTTTGTTCCTTGAACAACCGGGAGGAGTGCTTGGCGTGTGGAAGT TAGATGCTTCACTACACAGTTAAAATCTATTTTTAACCAAGACGACACCATTATACAACT GGCTGATCATTTGGTCTCAATAACTGAAAAGGGAGCCCTTCGTGTAGTTTGTATGAGCTG ATTTCCATACTGGGGGGTAGTGGGGCTCCCCTGTCTGCTGAATTTCATCTTTGGCTTGTA CTGTAACATCAAAATTCTTGGGTTACTGCAAATGTACATATGTGTTACTGTTAACGTTAT TGACGTGTGGTGTTGCCATGTTGGCAATGGTACTTTGGGTTTGGGAGTCTCATGGTTTTG TATTTGCTTTTGCGTTATCATTTTTTGATGTGGTACGAGTGGCACATCTTTGGCTGTGTG ATATTTTCAATTTGTTACTGTAATGGAATTTATCAGGAGCTG