Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0167100-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3376576:3386400:1 gene:Os06g0167100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os06t0167100-01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)
Sequence

ATGGACCTCGCCATCAACCCCTTCTCCTCCGGCACCCGCCTCCGGGACATGATACGGGCG
ATACGCGCGTGCAAGACGGCGGCGGAGGAGCGGGCGGTGGTGCGGCGGGAGTGCGCGGCG
ATACGGGCGGCCATCAGCGAGGGGGACCAGGACTACCGCCACCGGAACATGGCCAAGCTC
ATGTTCATCCACATGCTCGGGTACCCCACCCACTTCGGCCAGATGGAGTGCCTCAAGCTC
ATCGCCGCCGCGGGCTTCCCCGAGAAGCGCATCGGGTACCTCGGCCTCATGCTGCTGCTC
GACGAGCGGCAGGAGGTGCTCATGCTCGTCACCAACTCGCTCAAGCAAGATCTTAACCAC
TCGAACCAGTTCATTGTGGGGCTTGCACTCTGTGCTCTTGGCAACATTTGCTCCGCTGAA
ATGGCGCGTGATCTGTCACCTGAGGTGGAGAGGCTATTGCAAAGTAGGGAACCAAATACC
AAGAAGAAGGCTGCCTTATGCTCTATAAGGATCGTACGGAAGGTTCCAGATTTGGCAGAG
AACTTCATGGGCTCTGCTGTTTCACTACTGAAGGAAAAACATCACGGGGTTCTCATATCT
GCTGTTCAGCTCTGCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAGTACCTGAGG
AAGAACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGTTCATATGCT
CCTGAATATGACATTGCTGGAATTACGGATCCGTTCTTGCATATCAGAGTGCTTAAGCTC
ATGCGAATTTTGGGTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGATATTCTTGCT
CAGGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTATATGAATGT
GTTGAGACTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATC
TTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGATATGTTGCTCTGAACATGCTT
ATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACAATATTAGAG
TGTGTCAAGGATGCTGATGTATCTATTCGCAAAAGGGCCCTTGAACTTGTTTACCTTCTT
GTCAACGATGCAAATGCAAAATCTTTGACCAAGGAGCTTGTTGATTACCTGGAAGTAAGT
GATCAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAAAAGTTTTCC
CAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTGGCTGGAAATTAT
GTGAAGGACGATGTATGGCATGCTCTAATAGTCTTAATAAGCAATGCATCTGAACTCCAA
GGATACTCAGTGAGATCATTATACAAGGCATTGCTAGCTTGCGGTGAACAGGAAAGTTTG
GTTAGGGTAGCTGTATGGTGCATTGGTGAGTATGGTGAAATGCTGGTGAACAATGTTGGT
ATGCTGGACATAGAGGAACCAATCACGGTAACAGAATCTGATGCCGTGGATGCTGTAGAG
GTCTCTCTTAAACGATACTCTGCAGACGTGACAACTCGGGCTATGTGTCTAGTATCTCTC
TTGAAGCTCTCTTCCCGATTCCCACCGACTTCAGAGAGGATAAAGGAAATAGTTGCACAG
AATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAACTCCATTATA
CAGAGGCATCAGTCTATAAAATCATCTTTGCTTGAGCGGATGCCTGTGATAGATGAAGCT
AGTTACTTGGCTAAGAGAGCTGCTTCCACACAAGCAACTATTTCATCAGATAAATTAGCT
GCTGCAGCAACTCCTGGAAGCTCGCTTAAGCTTCCAAATGGTGTAGCAAAGCCACCACCG
GCTCCTCTAGCTGATTTGCTTGATTTAAGTTCTGACGATGCTCCTGCGACTACTTCCGCC
CCTACTACAGCACCTAATGATTTCCTACAGGATCTTTTGGGCATAGGCTTGACTGATACA
TCTACAGCAGGTGGAGCTCCATCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATT
GGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAA
GCTGAGACTAAAGTTGCACCTGTTACACCCCAAGTTGTGGATCTTCTTGATGGTTTGTCC
TCAAGCACATCTCTTTCTGATGAGAATACAGCTTACCCGCCAATCACAGCTTTCCAGAGT
GCAGCTTTGAAGATCACTTTCAATTTTAAGAAGCAGTCTGGAAAACCTCAGGAGACTACA
ATTCATGCTAGCTTTACAAATTTGACATCTAATACATTCACGGATTTCATCTTTCAGGCA
GCTGTACCAAAGTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACGCTTCCTGCC
AGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACATGGACAGAAA
CCCCTTGCGATGCGTATCCGGATAACTTACAAAGTGAACGGTGAGGACAGGCTGGAGCAA
GGGCAAATCAACAATTTTCCTGCTGGATTGTAG

Peptide Sequence

PEP ID

Os06t0167100-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3376576:3386400:1 gene:Os06g0167100 transcript:Os06t0167100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os06t0167100-01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)
Sequence

MDLAINPFSSGTRLRDMIRAIRACKTAAEERAVVRRECAAIRAAISEGDQDYRHRNMAKL
MFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNH
SNQFIVGLALCALGNICSAEMARDLSPEVERLLQSREPNTKKKAALCSIRIVRKVPDLAE
NFMGSAVSLLKEKHHGVLISAVQLCAELCKASKEALEYLRKNCLDGLVRILRDVSNSSYA
PEYDIAGITDPFLHIRVLKLMRILGQGDADCSEFVNDILAQVATKTESNKNAGNAILYEC
VETIMGIEATSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAMEVDTQAVQRHRATILE
CVKDADVSIRKRALELVYLLVNDANAKSLTKELVDYLEVSDQDFKDDLTAKICSIVEKFS
QDKLWYLDQMFKVLSLAGNYVKDDVWHALIVLISNASELQGYSVRSLYKALLACGEQESL
VRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDAVEVSLKRYSADVTTRAMCLVSL
LKLSSRFPPTSERIKEIVAQNKGNTVLELQQRSIEFNSIIQRHQSIKSSLLERMPVIDEA
SYLAKRAASTQATISSDKLAAAATPGSSLKLPNGVAKPPPAPLADLLDLSSDDAPATTSA
PTTAPNDFLQDLLGIGLTDTSTAGGAPSASTDILMDLLSIGSSPVQNGPPTVSNFSLPGQ
AETKVAPVTPQVVDLLDGLSSSTSLSDENTAYPPITAFQSAALKITFNFKKQSGKPQETT
IHASFTNLTSNTFTDFIFQAAVPKFIQLRLDPASSNTLPASGNDSVTQSLSVTNNQHGQK
PLAMRIRITYKVNGEDRLEQGQINNFPAGL

Transcript Sequence

Transcript ID

Os06t0167100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3376576:3386400:1 gene:Os06g0167100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Armadillo-like helical domain containing protein. (Os06t0167100-01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)
Sequence

GGCCTCTTCGCAAATCGCAATTCCCACCACCACCACCACCACCACCATCGCCACCGCCTA
CTCCTCCTCCTCCCAGATCCACCCGGCCGCCGCCGCCGCCGCCGCCGCCCCCCACGCCCC
GCGGCGGCGAGATCCCTCCCCCGTCGCCCCACCCTGGATTCCGTCGAGAAGATCGTCGAG
GACTTCGCCATGGACCTCGCCATCAACCCCTTCTCCTCCGGCACCCGCCTCCGGGACATG
ATACGGGCGATACGCGCGTGCAAGACGGCGGCGGAGGAGCGGGCGGTGGTGCGGCGGGAG
TGCGCGGCGATACGGGCGGCCATCAGCGAGGGGGACCAGGACTACCGCCACCGGAACATG
GCCAAGCTCATGTTCATCCACATGCTCGGGTACCCCACCCACTTCGGCCAGATGGAGTGC
CTCAAGCTCATCGCCGCCGCGGGCTTCCCCGAGAAGCGCATCGGGTACCTCGGCCTCATG
CTGCTGCTCGACGAGCGGCAGGAGGTGCTCATGCTCGTCACCAACTCGCTCAAGCAAGAT
CTTAACCACTCGAACCAGTTCATTGTGGGGCTTGCACTCTGTGCTCTTGGCAACATTTGC
TCCGCTGAAATGGCGCGTGATCTGTCACCTGAGGTGGAGAGGCTATTGCAAAGTAGGGAA
CCAAATACCAAGAAGAAGGCTGCCTTATGCTCTATAAGGATCGTACGGAAGGTTCCAGAT
TTGGCAGAGAACTTCATGGGCTCTGCTGTTTCACTACTGAAGGAAAAACATCACGGGGTT
CTCATATCTGCTGTTCAGCTCTGCGCAGAACTTTGTAAAGCAAGCAAAGAGGCATTGGAG
TACCTGAGGAAGAACTGCCTTGATGGTTTGGTCAGAATACTGAGAGATGTGTCCAATAGT
TCATATGCTCCTGAATATGACATTGCTGGAATTACGGATCCGTTCTTGCATATCAGAGTG
CTTAAGCTCATGCGAATTTTGGGTCAAGGAGATGCAGATTGCAGTGAGTTTGTGAATGAT
ATTCTTGCTCAGGTTGCAACAAAAACTGAGTCAAATAAGAACGCAGGAAATGCTATTTTA
TATGAATGTGTTGAGACTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCA
ATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGATATGTTGCTCTG
AACATGCTTATGAAGGCCATGGAGGTAGACACGCAAGCAGTGCAGAGGCATAGAGCAACA
ATATTAGAGTGTGTCAAGGATGCTGATGTATCTATTCGCAAAAGGGCCCTTGAACTTGTT
TACCTTCTTGTCAACGATGCAAATGCAAAATCTTTGACCAAGGAGCTTGTTGATTACCTG
GAAGTAAGTGATCAGGACTTCAAGGACGACCTCACAGCAAAGATATGCTCAATTGTTGAA
AAGTTTTCCCAAGATAAACTTTGGTACTTAGACCAGATGTTCAAGGTTTTATCTCTGGCT
GGAAATTATGTGAAGGACGATGTATGGCATGCTCTAATAGTCTTAATAAGCAATGCATCT
GAACTCCAAGGATACTCAGTGAGATCATTATACAAGGCATTGCTAGCTTGCGGTGAACAG
GAAAGTTTGGTTAGGGTAGCTGTATGGTGCATTGGTGAGTATGGTGAAATGCTGGTGAAC
AATGTTGGTATGCTGGACATAGAGGAACCAATCACGGTAACAGAATCTGATGCCGTGGAT
GCTGTAGAGGTCTCTCTTAAACGATACTCTGCAGACGTGACAACTCGGGCTATGTGTCTA
GTATCTCTCTTGAAGCTCTCTTCCCGATTCCCACCGACTTCAGAGAGGATAAAGGAAATA
GTTGCACAGAATAAAGGGAATACTGTGCTTGAACTACAACAGAGGTCAATTGAATTCAAC
TCCATTATACAGAGGCATCAGTCTATAAAATCATCTTTGCTTGAGCGGATGCCTGTGATA
GATGAAGCTAGTTACTTGGCTAAGAGAGCTGCTTCCACACAAGCAACTATTTCATCAGAT
AAATTAGCTGCTGCAGCAACTCCTGGAAGCTCGCTTAAGCTTCCAAATGGTGTAGCAAAG
CCACCACCGGCTCCTCTAGCTGATTTGCTTGATTTAAGTTCTGACGATGCTCCTGCGACT
ACTTCCGCCCCTACTACAGCACCTAATGATTTCCTACAGGATCTTTTGGGCATAGGCTTG
ACTGATACATCTACAGCAGGTGGAGCTCCATCAGCAAGCACAGATATTCTGATGGATCTT
CTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTT
CCTGGTCAAGCTGAGACTAAAGTTGCACCTGTTACACCCCAAGTTGTGGATCTTCTTGAT
GGTTTGTCCTCAAGCACATCTCTTTCTGATGAGAATACAGCTTACCCGCCAATCACAGCT
TTCCAGAGTGCAGCTTTGAAGATCACTTTCAATTTTAAGAAGCAGTCTGGAAAACCTCAG
GAGACTACAATTCATGCTAGCTTTACAAATTTGACATCTAATACATTCACGGATTTCATC
TTTCAGGCAGCTGTACCAAAGTTTATCCAGTTGCGTTTGGACCCCGCTAGCAGCAACACG
CTTCCTGCCAGTGGAAATGATTCTGTTACACAAAGCCTCAGTGTCACAAATAACCAACAT
GGACAGAAACCCCTTGCGATGCGTATCCGGATAACTTACAAAGTGAACGGTGAGGACAGG
CTGGAGCAAGGGCAAATCAACAATTTTCCTGCTGGATTGTAGTTTGACCTGTGTCTATAA
TGTTGTGATAGCTCTTCCAACTGCTGCAAGCAAAGGCGAGTTTTTCTTTTTACTTTTTTC
TGCTCTTCCCCTTTTGCTTGCCTTCTAGTGAGTTATGTACACGACTTAGCTGGTTTTGGC
CATTCATTCTTCCTTTCTATATTGTATAGTAGCCGGCAGCAATTAATGCTACATCTTCAG
TTTTGGCAAAATGTATTCATATGGTGCTGTATATCACTTGAGGATAACTAAAATTTTCAG
CCTCCCCCTCATTTCAGGCAGC