Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0166200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3328557:3331513:1 gene:Os06g0166200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0166200-01)
Sequence

ATGCCGCCTCCCCTCTCCTTCCTCCACCTCGCCGCCAACCCCACCCCCCTCCACGCCTCG
CCGCTTCGCCGCGCCCGCCTCCGCCACCGCCTCTCCCTCCGCACGGACCACCCGTCCCGG
CGCGCCGTGGCGTCGGCGTCGGCGTCGGCGGGCGAGAACCCGTCCACCCCGGGGGGTCCT
ATAGCCGACGTCGAGATGGTCCGTGGCAAGGACGGCGTGTGGACGGCGCGGCCGCCGACG
GTGGTGGTGCTGTGGGACCTCGACAACAAGCCCCCGCGCGGGCCGCCGTTCCCGGCCGCC
ACCGCGCTCCGCGACGCGGCGTCCCTCCTCGGCCGCGTCGTGTCCGTCTCGGCCTTCGCC
AACCGCCACGCCTTCTCCCACGTCCCCGCCTGGGTCGCCGACGAGCGCCGGGAGCGCCGC
GCCATGGACCGCGCCGAGCGCGCCGGCGCCGCGTCCCCGCCCGTCCCTTACTCCTGCGCC
GTGTGCGGCCGCCGCTTCCCCACCCGCCCCGACCTCACCCGCCACTTCCGCCAGCTCCAC
CAGCGCGAGCGCAACAAGAAGCTCTCGCGCCTCCGCTCCCTCAAGGGCAAGAAGCGGCAG
AAGTTCCGCGAGCGCTTCATCTCCGGGAACACCAAGTACGACGACGCCGCGCGGGAGCTC
CTCACCCCCAAGGTCGGGTACGGCCTCGCCGCCGAGCTCCGCCGCGCCGGCGTCCACGTC
CGCACCGTCTCCGACAAGCCGCAGGCGGCCGATCACGCGCTCAAGCGCCAGGTGAAGCAT
TCCGTGGCCTGCGGCGTTGACTGGCTCGTGCTCGTCTCCGATGACTCCGATTTCACCGAC
ACTGTGCGGAAAGCGCGCGCCGCCGACTTGAGAACGGTCGTGGTTGGCGATGGTTGCCGT
GCTCTTGGAAGTGTGGCTGACATTTGGTTGCCATGGGACCGCGTCGAGAATGGGGAGGTT
GATGAGGACATGCTGCGGAATGGGACACATATGGGATTCAGAGATGAAGAGGAAGATGAG
CAAGATGATGATGAGTTCATAGTGGATTGGGATACGAGTGATTTGGATGGTGTTGTCGAT
GACATTGTCGCGACGAGGACCAAGTTGTTCGGTGCTACAACGATGTCTGCATTTGCTGAT
GAGGAAATTATGGATGGCATATTGGGTGTTGGGATAAATGGCGGTGACATGTTATGGAGT
AGCGACGACGAGGATGAGGATGGTTATTTTTGA

Peptide Sequence

PEP ID

Os06t0166200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3328557:3331513:1 gene:Os06g0166200 transcript:Os06t0166200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0166200-01)
Sequence

MPPPLSFLHLAANPTPLHASPLRRARLRHRLSLRTDHPSRRAVASASASAGENPSTPGGP
IADVEMVRGKDGVWTARPPTVVVLWDLDNKPPRGPPFPAATALRDAASLLGRVVSVSAFA
NRHAFSHVPAWVADERRERRAMDRAERAGAASPPVPYSCAVCGRRFPTRPDLTRHFRQLH
QRERNKKLSRLRSLKGKKRQKFRERFISGNTKYDDAARELLTPKVGYGLAAELRRAGVHV
RTVSDKPQAADHALKRQVKHSVACGVDWLVLVSDDSDFTDTVRKARAADLRTVVVGDGCR
ALGSVADIWLPWDRVENGEVDEDMLRNGTHMGFRDEEEDEQDDDEFIVDWDTSDLDGVVD
DIVATRTKLFGATTMSAFADEEIMDGILGVGINGGDMLWSSDDEDEDGYF

Transcript Sequence

Transcript ID

Os06t0166200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3328557:3331513:1 gene:Os06g0166200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os06t0166200-01)
Sequence

AACCAAACACCTTGTGGGCGCGACCTCGCCGCGCTCGCCATGCCGCCTCCCCTCTCCTTC
CTCCACCTCGCCGCCAACCCCACCCCCCTCCACGCCTCGCCGCTTCGCCGCGCCCGCCTC
CGCCACCGCCTCTCCCTCCGCACGGACCACCCGTCCCGGCGCGCCGTGGCGTCGGCGTCG
GCGTCGGCGGGCGAGAACCCGTCCACCCCGGGGGGTCCTATAGCCGACGTCGAGATGGTC
CGTGGCAAGGACGGCGTGTGGACGGCGCGGCCGCCGACGGTGGTGGTGCTGTGGGACCTC
GACAACAAGCCCCCGCGCGGGCCGCCGTTCCCGGCCGCCACCGCGCTCCGCGACGCGGCG
TCCCTCCTCGGCCGCGTCGTGTCCGTCTCGGCCTTCGCCAACCGCCACGCCTTCTCCCAC
GTCCCCGCCTGGGTCGCCGACGAGCGCCGGGAGCGCCGCGCCATGGACCGCGCCGAGCGC
GCCGGCGCCGCGTCCCCGCCCGTCCCTTACTCCTGCGCCGTGTGCGGCCGCCGCTTCCCC
ACCCGCCCCGACCTCACCCGCCACTTCCGCCAGCTCCACCAGCGCGAGCGCAACAAGAAG
CTCTCGCGCCTCCGCTCCCTCAAGGGCAAGAAGCGGCAGAAGTTCCGCGAGCGCTTCATC
TCCGGGAACACCAAGTACGACGACGCCGCGCGGGAGCTCCTCACCCCCAAGGTCGGGTAC
GGCCTCGCCGCCGAGCTCCGCCGCGCCGGCGTCCACGTCCGCACCGTCTCCGACAAGCCG
CAGGCGGCCGATCACGCGCTCAAGCGCCAGGTGAAGCATTCCGTGGCCTGCGGCGTTGAC
TGGCTCGTGCTCGTCTCCGATGACTCCGATTTCACCGACACTGTGCGGAAAGCGCGCGCC
GCCGACTTGAGAACGGTCGTGGTTGGCGATGGTTGCCGTGCTCTTGGAAGTGTGGCTGAC
ATTTGGTTGCCATGGGACCGCGTCGAGAATGGGGAGGTTGATGAGGACATGCTGCGGAAT
GGGACACATATGGGATTCAGAGATGAAGAGGAAGATGAGCAAGATGATGATGAGTTCATA
GTGGATTGGGATACGAGTGATTTGGATGGTGTTGTCGATGACATTGTCGCGACGAGGACC
AAGTTGTTCGGTGCTACAACGATGTCTGCATTTGCTGATGAGGAAATTATGGATGGCATA
TTGGGTGTTGGGATAAATGGCGGTGACATGTTATGGAGTAGCGACGACGAGGATGAGGAT
GGTTATTTTTGAGATTCATGTAGATTGACAGGACTTGTGTTGTACTGCTATCAGCAAACC
AAAAGGCATCATCGCATCGACACAAACACAGCTGAAAAAGAACGGCCATCTTCTAACATG
CAGGCTGCAAATTCTGAATAACATCATCCTGTTGGGCACTTGGGCTGTAGCTGAAGCTGG
AGAAAGAAGCTCATGGTTTGAGAGTTGGAGAAGCTGGCTGCACATTTCACATGAGAATCG
CGTCCATTTCAATCAGGCACACAAGGTTACCTTCCAGCTGATTTCGACGAAGAAACAACT
GTATGAGCATGTTTGTCGCGGCGAGGAGGTGGCAGCCATCCGAGTACAAGAAAGTAATTC
CTACCTCTCCTGCCGGAGAAGCTCAGCTAAAATTGATTAGAAACACGAGATGTCGGGATA
GTTCCTGGATGGCATTGCTGAACATGGATGCACTGACATGCATATCTCGACTATTAGCTG
ATGTATTGAGTAGAGTAAAGTATTACACCGA