Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0163300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3195612:3198736:1 gene:Os06g0163300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os06t0163300-01)
Sequence

ATGATGCACGCGAAGTCGGAGTCGGACGTGACGAGCCTGGCGCCGTCGTCGCCGCCGCGG
TCGCCGAAGAGGGGCGGCGGCGTGGGCGTGGGCGGCGCGAACTACTACGTGCAGAGCCCG
TCGCGGGAGTCGCACGACGGCGGGTACAAGTCGTCGTCGATGCAGGCGACGCCGGTGTAC
AACAGCCCGAACGAGTCGCCGTCGCACCCTTCCTACGGCCGCCACTCCCGCTCCTCCTCC
GTCAGCCGCTTCTCCGGCACCCTCCGCGACGGCTCCCGCAAGGCCGGCGGCGAGCGCAAG
GCGCTCAACGACAAGGGCTGGCCCGAGTGCAACGTCATCGAGGAGGAGGGCCCCTACGAG
GACCTCGCCGGCGACACCGGCCTCTCCCGCCGCTGCCAGATCGTCCTCGGCTTCCTCTGC
TTCGTCCTCCTCTTCACCGTCTTCTGCCTCATCATCTGGGGCGCCGCTCGCCCCTACGAG
CCCGACGTCGTCGTCAAGAGCTTGACGATGGATGATTTCTACGCTGGTGAGGGCACAGAC
CACAGTGGGGTTCCAACCAAATTGGTTACACTGAACTGCTCTCTGCACATAGCTGTATAC
AACCCTGCTTCAATGTTTGGAATCCATGTCACGACGGGTCCTATTCGCCTTCTCTATTCA
GAGATCTCTATCGGGGTTGGACAGGTTCGCAGGTACTACCAGCCGAGGAAGAGCCACCGG
TTGGTGACGGCGGTGGTCCACGGCAACAAGGTGCCCCTCTACGGCGCCGGCGGCGGGCTG
ATGCTGTCGAGCTCCGGCGGCGCGGTGCCATTGACGCTGGACTTCGACCTCACCTCCCGG
GGATACGTCATCGGCAAGCTGGTGAGGGTGACGCACAAGGTGCACGTGACGTGCCCCATC
GTCGTCGACGCCAAGAAGACGAAGCCCATCAAGTTCTCCAAGAAGGCCTGCGCCGTCTAC
AAGATCTGA

Peptide Sequence

PEP ID

Os06t0163300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3195612:3198736:1 gene:Os06g0163300 transcript:Os06t0163300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os06t0163300-01)
Sequence

MMHAKSESDVTSLAPSSPPRSPKRGGGVGVGGANYYVQSPSRESHDGGYKSSSMQATPVY
NSPNESPSHPSYGRHSRSSSVSRFSGTLRDGSRKAGGERKALNDKGWPECNVIEEEGPYE
DLAGDTGLSRRCQIVLGFLCFVLLFTVFCLIIWGAARPYEPDVVVKSLTMDDFYAGEGTD
HSGVPTKLVTLNCSLHIAVYNPASMFGIHVTTGPIRLLYSEISIGVGQVRRYYQPRKSHR
LVTAVVHGNKVPLYGAGGGLMLSSSGGAVPLTLDFDLTSRGYVIGKLVRVTHKVHVTCPI
VVDAKKTKPIKFSKKACAVYKI

Transcript Sequence

Transcript ID

Os06t0163300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3195612:3198736:1 gene:Os06g0163300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os06t0163300-01)
Sequence

CTCTGCCGCGCCTGCGCCACCACCACCACCGTTCGTCCGCTCGCCGCGTCGACGAGCTCC
TCCTCCGCTTCGCGCTTCGTGTCAGGGTTTGGAGTGGAGTGGAGGGGGAAGGAAAAGGGG
GAGGGATGATGCACGCGAAGTCGGAGTCGGACGTGACGAGCCTGGCGCCGTCGTCGCCGC
CGCGGTCGCCGAAGAGGGGCGGCGGCGTGGGCGTGGGCGGCGCGAACTACTACGTGCAGA
GCCCGTCGCGGGAGTCGCACGACGGCGGGTACAAGTCGTCGTCGATGCAGGCGACGCCGG
TGTACAACAGCCCGAACGAGTCGCCGTCGCACCCTTCCTACGGCCGCCACTCCCGCTCCT
CCTCCGTCAGCCGCTTCTCCGGCACCCTCCGCGACGGCTCCCGCAAGGCCGGCGGCGAGC
GCAAGGCGCTCAACGACAAGGGCTGGCCCGAGTGCAACGTCATCGAGGAGGAGGGCCCCT
ACGAGGACCTCGCCGGCGACACCGGCCTCTCCCGCCGCTGCCAGATCGTCCTCGGCTTCC
TCTGCTTCGTCCTCCTCTTCACCGTCTTCTGCCTCATCATCTGGGGCGCCGCTCGCCCCT
ACGAGCCCGACGTCGTCGTCAAGAGCTTGACGATGGATGATTTCTACGCTGGTGAGGGCA
CAGACCACAGTGGGGTTCCAACCAAATTGGTTACACTGAACTGCTCTCTGCACATAGCTG
TATACAACCCTGCTTCAATGTTTGGAATCCATGTCACGACGGGTCCTATTCGCCTTCTCT
ATTCAGAGATCTCTATCGGGGTTGGACAGGTTCGCAGGTACTACCAGCCGAGGAAGAGCC
ACCGGTTGGTGACGGCGGTGGTCCACGGCAACAAGGTGCCCCTCTACGGCGCCGGCGGCG
GGCTGATGCTGTCGAGCTCCGGCGGCGCGGTGCCATTGACGCTGGACTTCGACCTCACCT
CCCGGGGATACGTCATCGGCAAGCTGGTGAGGGTGACGCACAAGGTGCACGTGACGTGCC
CCATCGTCGTCGACGCCAAGAAGACGAAGCCCATCAAGTTCTCCAAGAAGGCCTGCGCCG
TCTACAAGATCTGAGAGGCCATCGTCGCCGCCGCCGTCGCCGGTCGTCGTCCATCACGCC
GGCGGCGGGCGTCGCCTGCAGTGATCGATCGGCGACGGAGCCGTTCTTCTGTTCTTGCAG
TTGTTGTATGTATTATGCTTGTGAAGAACAATAAGCGTTTATATGGTCACTTGTTAATTT
TACTTG