Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0162800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3162860:3169331:-1 gene:Os06g0162800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 5 description:MADS box protein. (Os06t0162800-01)
Sequence

ATGGGGCGAGGGAAAGTAGAGCTGAAGCGGATCGAGAACAAGATAAGCCGGCAGGTGACG
TTCGCGAAGAGGAGGAACGGGCTGCTGAAGAAGGCGTACGAGCTGTCCGTGCTCTGCGAC
GCCGAGGTCGCCCTCATCATCTTCTCCACCCGCGGCCGCCTCTTCGAGTTCTCCACCTCC
TCCTGTATGTACAAGACACTGGAGCGATACCGCAGTTGCAACTACAACCTTAACTCATGT
GAAGCATCTGCTGCACTGGAAACTGAACTAAGCAATTACCAAGAGTACTTAAAGTTAAAG
ACAAGAGTTGAGTTCCTACAAACAACTCAGAGAAATCTTCTTGGCGAGGACTTGGTTCCA
CTTAGCTTGAAGGAGCTCGAGCAACTTGAGAACCAGATCGAGATATCCCTCATGAATATC
AGGTCATCAAAGAATCAACAGTTGCTTGATCAAGTATTTGAGCTCAAACGTAAGGAACAA
CAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAGATACAAGAAACTAGTGGAGAAAAT
ATGCTTCATATATCTTGCCAAGATGTAGGGCCCAGTGGCCATGCTAGTGAAGCTAACCAA
GAGTTTCTCCATCATGCAATTTGTGACCCTTCCCTGCATATAGGGTATCAAGCTTACATG
GATCACCTCAACCAATGA

Peptide Sequence

PEP ID

Os06t0162800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3162860:3169331:-1 gene:Os06g0162800 transcript:Os06t0162800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 5 description:MADS box protein. (Os06t0162800-01)
Sequence

MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTS
SCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVP
LSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGEN
MLHISCQDVGPSGHASEANQEFLHHAICDPSLHIGYQAYMDHLNQ

Transcript Sequence

Transcript ID

Os06t0162800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3162860:3169331:-1 gene:Os06g0162800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 5 description:MADS box protein. (Os06t0162800-01)
Sequence

AACAAACGGAGCAAGACTGCAAGGGAGAGGGAGAGAGAGGGAAGCTTGCAGGCTGCAGCT
AACTAGCTAGGCAAGGAGAGAGAGGAGATAGATCAAGAAGAGATTTTGAGACCGAGAGAG
AGCTAGAGAGAGATCGATGGGGCGAGGGAAAGTAGAGCTGAAGCGGATCGAGAACAAGAT
AAGCCGGCAGGTGACGTTCGCGAAGAGGAGGAACGGGCTGCTGAAGAAGGCGTACGAGCT
GTCCGTGCTCTGCGACGCCGAGGTCGCCCTCATCATCTTCTCCACCCGCGGCCGCCTCTT
CGAGTTCTCCACCTCCTCCTGTATGTACAAGACACTGGAGCGATACCGCAGTTGCAACTA
CAACCTTAACTCATGTGAAGCATCTGCTGCACTGGAAACTGAACTAAGCAATTACCAAGA
GTACTTAAAGTTAAAGACAAGAGTTGAGTTCCTACAAACAACTCAGAGAAATCTTCTTGG
CGAGGACTTGGTTCCACTTAGCTTGAAGGAGCTCGAGCAACTTGAGAACCAGATCGAGAT
ATCCCTCATGAATATCAGGTCATCAAAGAATCAACAGTTGCTTGATCAAGTATTTGAGCT
CAAACGTAAGGAACAACAACTTCAAGATGCTAATAAAGACTTAAAAAGGAAGATACAAGA
AACTAGTGGAGAAAATATGCTTCATATATCTTGCCAAGATGTAGGGCCCAGTGGCCATGC
TAGTGAAGCTAACCAAGAGTTTCTCCATCATGCAATTTGTGACCCTTCCCTGCATATAGG
GTATCAAGCTTACATGGATCACCTCAACCAATGAATGAATTGCTTATCACATTAATGGAC
ATCTCCTATGTTGGATGTGGTGTTTGACGTAATGCTCTCTTTTACATGCGGGTTTTACCT
TAAGTGTGTGTGCTAAATTTAGTGCGTTTGTTTATGCTCTTTTGAACTGAACAAAGGAAT
GATCCCGGTTTGATTGATGAATGCTGCAAGAACATAATCTATATGTTAGTCTGAATTCAG
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