Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0161400-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:3111535:3115146:1 gene:Os06g0161400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os06t0161400-01)
Sequence

ATGGAGTCGCGAGGCGAGGGCGATGGCGAAGGAGCCTCAATCCGGCGAGGGCGAGGGCGA
GTAATGGGGTCGGAGGGCGAGGGCGAGGGCGAAGGCGAAGGCGAGGAGGTGAAGTGGGCG
ATGCTCTTCACCCTCCCGATCCCGGTCACCGACGAGGAGCTTCCTCCGACCAGAGACCTG
GCCATGAGCAAGCAGCCGCCGCCGCTCATCTCCTTTCTCTGCCTTCCGCAGCGGAGCCTC
GGCGAGGCCGCCCACTGCTTCGTTGAGATAGTCTGCGCGGATTCTGCTGGTCGGCTTCTC
TTGAGCGCCAAGCCGCGGCCAGCACCGGCCGCAACCACCTCTGCTGCTCTGCCTCCTCGT
CAAGGCGTCATCATCATCTGCGACGCCACAAACCTCAAGGTCATGCGCCTCCCGCTGCCA
GTCGGCGCGACTTGTGATGACAACGAGCGCGGGTTCCCATGCCTGGCGGTACTCAGCGAT
CCGCGCGACGAGGAGGATGGCGATGCCTACATCGTTGTTCTACTCCATGCGGACGCGAGC
GGAGCCTTCCAGGAGGTTCTCTGCTATGAATCCAAGACCGGAGGAGTACTCGACACACAG
ACCCATGACCAGGACTGGAGCGACACGGAGACCCACGACCAAGACTGGAGTGAGAAGTTG
CTGTCCTGCAATTCGCAGCAGCCACCGAGGGGTTGGCACAGACACAGCCACAGCCACCGT
GCGATACCTCTCGATGGCGAGGTCTGTTGGATTGATGCTGCTTATGGTTTGGTGCTATGT
GAAGTTCTGTTGGAGGATCCCAGGCTTCGGTACGTCCAGCTCCCAGAAGGCTGCACGATG
GATGAAGACGATGACATGGGGTCGCCTGCTGTTGTAGAGAAGCTTAGGAGACGTTGTATT
GGTGTTAGTGATGGCAAACTTAGATACCTTCAGATAGACAGTTCAGGACAGTCGATTGCC
GTGTGGACCTTGATGACTCTTAAGGATGTCACATTTTGGGAGCATACATTCTCAGTCGAT
TTAGTATCTCTTCGTGCTGATAAGAGTTTCCAGGAAGCAGGACTGAACCCACACATATTC
CCCTCAGTGGCAGGCATTCATCCTATCGACACTAGTACCATTTTCTTAGTGCAGAACTCA
ATCATATTTTCTGTCAGCTCAGATACAACAACTTCTTCTATCAAAGTTGGTGATCACCAC
AAGTTCCTGCTCAACGAGAATGAGATCACTCCGAGTCTGTTTCTCCTTCCGTGGCTGGTT
CATGACCCAGCAGACCTGCTTCCCCAAGAGACACCACCGAGATCAAATTGTTCAAAGAGA
TGGCTTCGTGCCCTTAAACTAAAGCAAGCACTCAAGAGGGGGATCGTGTGGCTGAGTGAT
AACCATGAAGTTGTAACTCACGTTGGAGATGTAATAGATTTTCTTACCATTCCTGCTGGC
GGTTCCTTTAGATCTGCAGCTATTTGTGTCAAGAAGGTTGGTTCCTATTGTTCGAAAACA
GGGAAGATATTGAAATTTCACAATTCGAGGTTACATGCAAATGATCCGGTCAAGGCATTG
CCAATGGAAGATTTCCAAATCATCAATGACGTGGATGAAGATGTCGAGTCATTGTCAATG
GAAGGTATCCACATCGTCAAAAACGTCAATGAAGCTAGAAGGTTTATCAATCAGTGGATT
AGCTGCCAGCAACCACATAGTTGTATAATGGATGTGGCTAAGTCTGTGGGTGTGGAAGAG
TGCATTAATATCTTGACGTACCTTGGGGGTGAAAATGCCACGTTCATGCTGATGAATTCC
CCGACATTCCTTGAGAAAACCGGCAACAACTTACGCAAGTCTTCTGATTTGAAGGAGTGG
GTCTACCTAAAAGAGTAG

Peptide Sequence

PEP ID

Os06t0161400-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:3111535:3115146:1 gene:Os06g0161400 transcript:Os06t0161400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os06t0161400-01)
Sequence

MESRGEGDGEGASIRRGRGRVMGSEGEGEGEGEGEEVKWAMLFTLPIPVTDEELPPTRDL
AMSKQPPPLISFLCLPQRSLGEAAHCFVEIVCADSAGRLLLSAKPRPAPAATTSAALPPR
QGVIIICDATNLKVMRLPLPVGATCDDNERGFPCLAVLSDPRDEEDGDAYIVVLLHADAS
GAFQEVLCYESKTGGVLDTQTHDQDWSDTETHDQDWSEKLLSCNSQQPPRGWHRHSHSHR
AIPLDGEVCWIDAAYGLVLCEVLLEDPRLRYVQLPEGCTMDEDDDMGSPAVVEKLRRRCI
GVSDGKLRYLQIDSSGQSIAVWTLMTLKDVTFWEHTFSVDLVSLRADKSFQEAGLNPHIF
PSVAGIHPIDTSTIFLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLV
HDPADLLPQETPPRSNCSKRWLRALKLKQALKRGIVWLSDNHEVVTHVGDVIDFLTIPAG
GSFRSAAICVKKVGSYCSKTGKILKFHNSRLHANDPVKALPMEDFQIINDVDEDVESLSM
EGIHIVKNVNEARRFINQWISCQQPHSCIMDVAKSVGVEECINILTYLGGENATFMLMNS
PTFLEKTGNNLRKSSDLKEWVYLKE

Transcript Sequence

Transcript ID

Os06t0161400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:3111535:3115146:1 gene:Os06g0161400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os06t0161400-01)
Sequence

GGGGGCGCCGCGCCGCGAATCGCTCCTCCTCCTCCTCTCCGGCTCTCTCTCTCTTTCCTC
CATCCGAAACCTCCAAAGGCAGGCGAGGGCGAGGGCGAGGGCGAGGGCTATCAATGGAGT
CGCGAGGCGAGGGCGATGGCGAAGGAGCCTCAATCCGGCGAGGGCGAGGGCGAGTAATGG
GGTCGGAGGGCGAGGGCGAGGGCGAAGGCGAAGGCGAGGAGGTGAAGTGGGCGATGCTCT
TCACCCTCCCGATCCCGGTCACCGACGAGGAGCTTCCTCCGACCAGAGACCTGGCCATGA
GCAAGCAGCCGCCGCCGCTCATCTCCTTTCTCTGCCTTCCGCAGCGGAGCCTCGGCGAGG
CCGCCCACTGCTTCGTTGAGATAGTCTGCGCGGATTCTGCTGGTCGGCTTCTCTTGAGCG
CCAAGCCGCGGCCAGCACCGGCCGCAACCACCTCTGCTGCTCTGCCTCCTCGTCAAGGCG
TCATCATCATCTGCGACGCCACAAACCTCAAGGTCATGCGCCTCCCGCTGCCAGTCGGCG
CGACTTGTGATGACAACGAGCGCGGGTTCCCATGCCTGGCGGTACTCAGCGATCCGCGCG
ACGAGGAGGATGGCGATGCCTACATCGTTGTTCTACTCCATGCGGACGCGAGCGGAGCCT
TCCAGGAGGTTCTCTGCTATGAATCCAAGACCGGAGGAGTACTCGACACACAGACCCATG
ACCAGGACTGGAGCGACACGGAGACCCACGACCAAGACTGGAGTGAGAAGTTGCTGTCCT
GCAATTCGCAGCAGCCACCGAGGGGTTGGCACAGACACAGCCACAGCCACCGTGCGATAC
CTCTCGATGGCGAGGTCTGTTGGATTGATGCTGCTTATGGTTTGGTGCTATGTGAAGTTC
TGTTGGAGGATCCCAGGCTTCGGTACGTCCAGCTCCCAGAAGGCTGCACGATGGATGAAG
ACGATGACATGGGGTCGCCTGCTGTTGTAGAGAAGCTTAGGAGACGTTGTATTGGTGTTA
GTGATGGCAAACTTAGATACCTTCAGATAGACAGTTCAGGACAGTCGATTGCCGTGTGGA
CCTTGATGACTCTTAAGGATGTCACATTTTGGGAGCATACATTCTCAGTCGATTTAGTAT
CTCTTCGTGCTGATAAGAGTTTCCAGGAAGCAGGACTGAACCCACACATATTCCCCTCAG
TGGCAGGCATTCATCCTATCGACACTAGTACCATTTTCTTAGTGCAGAACTCAATCATAT
TTTCTGTCAGCTCAGATACAACAACTTCTTCTATCAAAGTTGGTGATCACCACAAGTTCC
TGCTCAACGAGAATGAGATCACTCCGAGTCTGTTTCTCCTTCCGTGGCTGGTTCATGACC
CAGCAGACCTGCTTCCCCAAGAGACACCACCGAGATCAAATTGTTCAAAGAGATGGCTTC
GTGCCCTTAAACTAAAGCAAGCACTCAAGAGGGGGATCGTGTGGCTGAGTGATAACCATG
AAGTTGTAACTCACGTTGGAGATGTAATAGATTTTCTTACCATTCCTGCTGGCGGTTCCT
TTAGATCTGCAGCTATTTGTGTCAAGAAGGTTGGTTCCTATTGTTCGAAAACAGGGAAGA
TATTGAAATTTCACAATTCGAGGTTACATGCAAATGATCCGGTCAAGGCATTGCCAATGG
AAGATTTCCAAATCATCAATGACGTGGATGAAGATGTCGAGTCATTGTCAATGGAAGGTA
TCCACATCGTCAAAAACGTCAATGAAGCTAGAAGGTTTATCAATCAGTGGATTAGCTGCC
AGCAACCACATAGTTGTATAATGGATGTGGCTAAGTCTGTGGGTGTGGAAGAGTGCATTA
ATATCTTGACGTACCTTGGGGGTGAAAATGCCACGTTCATGCTGATGAATTCCCCGACAT
TCCTTGAGAAAACCGGCAACAACTTACGCAAGTCTTCTGATTTGAAGGAGTGGGTCTACC
TAAAAGAGTAGCAGCCATTTACTGGAGACTTATCTGACTGTATAAGAGGAAGACAGATAC
AGGAGCAGAACCTCTCATGCTGCAATGTAGATGCGGTCTAGAGGAAGACAGAACTACAGG
AGCCTCCACTTGTTCATTCGTCTCTTCAGAAATTTTTGTTGCTTCTGATCGAATGACGCA
GAATTGGTTGCCTTCTTTTTGTAAAGATAGTAGATAGGCACATGCTCAGAAGCCAAAAAG
AAAGCCGTCAACTTTTTTGTTTTCCTGTTACTATGTGTTGGCCATTATGCCGTGAAGTTT
ACAAACTGCTGAAATTTCCAACTACGTAGAATGTGCGCC