Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0144900-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:2372992:2374946:1 gene:Os06g0144900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase/Amb allergen domain containing protein. (Os06t0144900-01)
Sequence

GTCCTCTTTCCCGCGGTGCGGCGGCCGGCCGGGGCGGCGCTCCATACACCCATCGATCGT
TCTGAACCAGCAGGCATGGCGGGCTCCGTCGTGACGAGGAGCCCACTGTGCTCCATCCTC
TTCTACGTCCTCGCCACGGCCGCCGCGGCGACGGCGACGGCGACGCTTGTGGGCAACATC
ACCGCCGACGAGGAGTACTGGGCCAAGCGCTCCGAGGTGGCGCGCTCGTTCAACCGCGCC
GCCTACGTCAGCGACCCCGTCGCCGTGCTGAACAGGTTCAACGAGGACGTGCTGAATACC
ACGACGGCGACGGCGGCGGCGGCGCGGCGGTCGCTGATGAGGAGGTACCGGCGTCGTGGC
CCGTGCACGGTGACGAACCCGATCGACCTGTGCTGGCGCTGCCGCAAGAACTGGGCGAGC
CGTCGCAAGCGGCTGGCCAAGTGCGCCATGGGGTTCGGCCACAAGGCCACCGGCGGGCTC
GCCGGCAAGATCTACATCGTGACGGACGCCGGCGACGAGCACCTCGTCATCCCTCGGCGG
GGCACGCTCCGGCACGCCGTGATCCAGGAGCGGCCGCTGTGGATCGTCTTCGCGCGGAGC
ATGGTGATCAGGCTCGCCAAGGAGCTCATCGTCACCAGCGACAAGACCATCGACGGCCGC
GGCGCGCAGGTGCACGTCACCGGCGCGCAGATCACGGTGCAGGCGGTGAGCAACGTCATC
ATCCACAACCTCCACATCCACAACTCCGTGCCGCGCTCCGGCGGCCTCATCCGCGACTCC
ATGCACCACTTCGGCATCCGCGGCGAGAGCGACGGCGACGGCATCTCCGTCATGGGCTCC
AGCAACATCTGGATCGACCACGTCTCCATGTCCAACTGCTCCGACGGCCTCATCGACATC
ACCGACGGCTCCACCGCCATCACCATCTCCAACTCCCACTTCACCAAGCACGATCACGTG
ATGCTGTTCGGTGCACGCGACGACTCGCCGAAGGACAAGATCATGCAGGTAACGCTGGCA
TTCAACCACTTTGGCAAGGGGCTCGTGCAGAGGATGCCGAGGTGCAGGTTTGGATTCTTC
CACATGGTGAACAACGACTACACGCACTGGCTCATGTACGCCATCGGCGGCAACATGAAC
CCGACGATCATCAGCCAGGGGAACAGGTTCAGGGCAAGCGACGACATGAAGCTCAAGGAG
GTGACCAAGAGGGAGTACACGAGCTACGACGAGTACAAGGAGTGGGTGTGGAAGTCGCAG
GACGACCTCTTCCTCAACGGCGCCTTCTTCAACGAGTCCGGCGGCCGGAACGAGCGCCGG
TACAACCGGCTCGACCTCATCCAGGCCAGGAACGGCCGCTACGTCGGCCGGATGACCAGG
TTCGCCGGCACGCTGCCATGCCGTGTCGGCAAGAAATGCTAG

Peptide Sequence

PEP ID

Os06t0144900-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:2372992:2374946:1 gene:Os06g0144900 transcript:Os06t0144900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase/Amb allergen domain containing protein. (Os06t0144900-01)
Sequence

VLFPAVRRPAGAALHTPIDRSEPAGMAGSVVTRSPLCSILFYVLATAAAATATATLVGNI
TADEEYWAKRSEVARSFNRAAYVSDPVAVLNRFNEDVLNTTTATAAAARRSLMRRYRRRG
PCTVTNPIDLCWRCRKNWASRRKRLAKCAMGFGHKATGGLAGKIYIVTDAGDEHLVIPRR
GTLRHAVIQERPLWIVFARSMVIRLAKELIVTSDKTIDGRGAQVHVTGAQITVQAVSNVI
IHNLHIHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSNIWIDHVSMSNCSDGLIDI
TDGSTAITISNSHFTKHDHVMLFGARDDSPKDKIMQVTLAFNHFGKGLVQRMPRCRFGFF
HMVNNDYTHWLMYAIGGNMNPTIISQGNRFRASDDMKLKEVTKREYTSYDEYKEWVWKSQ
DDLFLNGAFFNESGGRNERRYNRLDLIQARNGRYVGRMTRFAGTLPCRVGKKC

Transcript Sequence

Transcript ID

Os06t0144900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:2372992:2374946:1 gene:Os06g0144900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase/Amb allergen domain containing protein. (Os06t0144900-01)
Sequence

TCGGCGGCCGGCTCACCTCTCTCCGCCGCCCGGCCCGCTCGCTGATGCTGCCGCCGCCGG
CTTCACGCGGGAAGAGGTCTCAGAAACCCTAGGCGAAAGCCGCCACACATTTCCTGAGTC
CTCTTTCCCGCGGTGCGGCGGCCGGCCGGGGCGGCGCTCCATACACCCATCGATCGTTCT
GAACCAGCAGGCATGGCGGGCTCCGTCGTGACGAGGAGCCCACTGTGCTCCATCCTCTTC
TACGTCCTCGCCACGGCCGCCGCGGCGACGGCGACGGCGACGCTTGTGGGCAACATCACC
GCCGACGAGGAGTACTGGGCCAAGCGCTCCGAGGTGGCGCGCTCGTTCAACCGCGCCGCC
TACGTCAGCGACCCCGTCGCCGTGCTGAACAGGTTCAACGAGGACGTGCTGAATACCACG
ACGGCGACGGCGGCGGCGGCGCGGCGGTCGCTGATGAGGAGGTACCGGCGTCGTGGCCCG
TGCACGGTGACGAACCCGATCGACCTGTGCTGGCGCTGCCGCAAGAACTGGGCGAGCCGT
CGCAAGCGGCTGGCCAAGTGCGCCATGGGGTTCGGCCACAAGGCCACCGGCGGGCTCGCC
GGCAAGATCTACATCGTGACGGACGCCGGCGACGAGCACCTCGTCATCCCTCGGCGGGGC
ACGCTCCGGCACGCCGTGATCCAGGAGCGGCCGCTGTGGATCGTCTTCGCGCGGAGCATG
GTGATCAGGCTCGCCAAGGAGCTCATCGTCACCAGCGACAAGACCATCGACGGCCGCGGC
GCGCAGGTGCACGTCACCGGCGCGCAGATCACGGTGCAGGCGGTGAGCAACGTCATCATC
CACAACCTCCACATCCACAACTCCGTGCCGCGCTCCGGCGGCCTCATCCGCGACTCCATG
CACCACTTCGGCATCCGCGGCGAGAGCGACGGCGACGGCATCTCCGTCATGGGCTCCAGC
AACATCTGGATCGACCACGTCTCCATGTCCAACTGCTCCGACGGCCTCATCGACATCACC
GACGGCTCCACCGCCATCACCATCTCCAACTCCCACTTCACCAAGCACGATCACGTGATG
CTGTTCGGTGCACGCGACGACTCGCCGAAGGACAAGATCATGCAGGTAACGCTGGCATTC
AACCACTTTGGCAAGGGGCTCGTGCAGAGGATGCCGAGGTGCAGGTTTGGATTCTTCCAC
ATGGTGAACAACGACTACACGCACTGGCTCATGTACGCCATCGGCGGCAACATGAACCCG
ACGATCATCAGCCAGGGGAACAGGTTCAGGGCAAGCGACGACATGAAGCTCAAGGAGGTG
ACCAAGAGGGAGTACACGAGCTACGACGAGTACAAGGAGTGGGTGTGGAAGTCGCAGGAC
GACCTCTTCCTCAACGGCGCCTTCTTCAACGAGTCCGGCGGCCGGAACGAGCGCCGGTAC
AACCGGCTCGACCTCATCCAGGCCAGGAACGGCCGCTACGTCGGCCGGATGACCAGGTTC
GCCGGCACGCTGCCATGCCGTGTCGGCAAGAAATGCTAGGCATGCATATGCTTGCTACTC
ACCGTGTGCGTGCCAAGGACATCATCATGATGATGCAGATGCAGAGAGGAGAGGAATTTT
CCATGACGATCGCATGGATATTTATATGTATGAATTATATTTCATATATATAATATGGTT
CGGCAGTAATGCAATCATTTGCAAAATTGCATAAGCCTTAGAGAACAGGGTTCGAAATTT
TGGACCAAAATTTTGGTCATTTCGGTCCTCTCCGATACGATATTACTTCGCCGAAATTTT
TCATTTTTTCAATTTTTTCATGAATTTTGGTAATATTTGTTCAAATTGAACTAAATTTTG
TGATATC