Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0144800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:2366746:2372091:-1 gene:Os06g0144800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein lepA. (Os06t0144800-01)
Sequence

ATGGCCGGCGCCGCCGCGCTCCGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTAC
GCCTTGTCCCGGGCGCTACAGCACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGAC
CGCGGCGGGGTGCTGGGTTCGGAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTC
TCCATCATCGCGCACGTCGACCACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTC
ACCGGCACCATCAAGAAGGGCCATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAG
AGAGAGAGGGGAATCACAGTCAAAGCACAAACAGCAACTATGTTCTACAGACATGCTAAC
AACCAACTTCCTGCATCTGATCAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGAT
ACTCCTGGGCATGTGGATTTCAGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGT
GCTCTTTTAGTAGTTGATGCAGCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTAC
CTTGCATTTGAGTCGAATCTAAGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACC
GCTGATCCAGATAATGTAAAGGCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAA
GCTCTGCTAACTTCAGCTAAAACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATT
GAGCGGATTCCTTCCCCACCTGGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGAT
TCATACTATGATGAGTATAAAGGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTC
CACAAAGGAGATAAGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTG
GGCATTATGCATCCAGAGCTTACTCCTACCGGTGTGCTTTACACTGGACAAGTTGGATAT
GTCATAAGCGGAATGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCA
AAGAGTATTGTCGAACCACTTCCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGT
CTATACCCAGCTGATGGCTCTGACTTTGACGCTCTTAGCCATGCAATTGAAAAACTAACA
TGTAACGATGCGAGTGTGTCTGTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTC
AGATGTGGCTTTCTAGGATTACTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAA
CATGGAGCTCAAGTCATATCGACAATACCGACAGTGCCATATATCTTTGAGTATGGTGAT
GGAAGCAAAGTGCAAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATA
GCAGCTTGTTGGGAACCAACAGTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGG
CCAGTAATTATGCTTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCATTGAT
GCCCAAAGGGCTTTGTTGAAGTACCGATTACCATTGAGGGAAATCATTGTGGATTTCTAC
AATGAACTGAAAAGCATAACATCTGGATATGCTACTTTTGATTATGAAGATTCTGAGTAC
CAACAGTCTGATCTTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATG
GCAACAATAGTCCACAACCAGAAAGCTCAGAGAGTTGGACGAGAATTAGTGGATAAACTC
AAGAAATTCATAGAACGGCAAATGTTTGAGATCACTATACAAGCCGCAGTTGGTTCAAAG
GTTATCGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGT
GGTGATATTACTCGCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATG
AAGCGTGTAGGGTCCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCC
AATTCAAAATAG

Peptide Sequence

PEP ID

Os06t0144800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:2366746:2372091:-1 gene:Os06g0144800 transcript:Os06t0144800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein lepA. (Os06t0144800-01)
Sequence

MAGAAALRRSARRVVLPGAYALSRALQHPERLLSSQASPDRGGVLGSELGLYPPERVRNF
SIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYRHAN
NQLPASDQPDAPSYLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAAQGVQAQTIANFY
LAFESNLSIIPVINKIDQPTADPDNVKAQLKRLFDIDPSEALLTSAKTGQGLSQVLPAVI
ERIPSPPGKCDSPVRMLLLDSYYDEYKGVICHVAVVDGALHKGDKIASAATGRTYEVLDV
GIMHPELTPTGVLYTGQVGYVISGMRSTKEARIGDTLHQAKSIVEPLPGFKPARHMVFSG
LYPADGSDFDALSHAIEKLTCNDASVSVTKETSTALGMGFRCGFLGLLHMDVFHQRLEQE
HGAQVISTIPTVPYIFEYGDGSKVQVENPAALASNPGKRIAACWEPTVIATIIIPSEYVG
PVIMLCSERRGEQQEYTFIDAQRALLKYRLPLREIIVDFYNELKSITSGYATFDYEDSEY
QQSDLVKMDILLNGQPVDAMATIVHNQKAQRVGRELVDKLKKFIERQMFEITIQAAVGSK
VIARETLSAMRKNVLAKCYGGDITRKKKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS
NSK

Transcript Sequence

Transcript ID

Os06t0144800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:2366746:2372091:-1 gene:Os06g0144800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GTP-binding protein lepA. (Os06t0144800-01)
Sequence

AACCAGAACCCTAGCTCCCGCCGCCGCCGCCGCCGCGCTGTTCCGGGATGGCCGGCGCCG
CCGCGCTCCGGCGATCCGCGCGCCGTGTCGTCCTGCCAGGCGCCTACGCCTTGTCCCGGG
CGCTACAGCACCCTGAGCGCCTCCTCTCCTCCCAGGCTTCGCCGGACCGCGGCGGGGTGC
TGGGTTCGGAGCTTGGGCTGTATCCCCCGGAGAGGGTCAGGAACTTCTCCATCATCGCGC
ACGTCGACCACGGCAAGTCCACGCTCGCCGACCGGTTGCTGGAGCTCACCGGCACCATCA
AGAAGGGCCATGGCCAACCTCAGTACCTCGACAAGTTACAGGTAGAGAGAGAGAGGGGAA
TCACAGTCAAAGCACAAACAGCAACTATGTTCTACAGACATGCTAACAACCAACTTCCTG
CATCTGATCAGCCAGATGCTCCAAGCTATTTGCTTAACTTGATTGATACTCCTGGGCATG
TGGATTTCAGCTACGAAGTATCCAGGTCGCTTGCAGCTTGTCAGGGTGCTCTTTTAGTAG
TTGATGCAGCCCAAGGTGTCCAAGCACAAACAATTGCAAACTTCTACCTTGCATTTGAGT
CGAATCTAAGCATCATTCCTGTTATTAATAAGATTGATCAGCCTACCGCTGATCCAGATA
ATGTAAAGGCTCAACTGAAGAGGTTATTTGACATTGATCCAAGTGAAGCTCTGCTAACTT
CAGCTAAAACTGGTCAGGGCCTTAGCCAGGTCTTGCCTGCTGTTATTGAGCGGATTCCTT
CCCCACCTGGAAAATGTGATTCACCTGTACGCATGCTTCTCTTAGATTCATACTATGATG
AGTATAAAGGGGTGATATGCCATGTTGCTGTTGTGGATGGTGCTCTCCACAAAGGAGATA
AGATTGCATCTGCCGCAACTGGTCGCACATATGAAGTCCTTGATGTGGGCATTATGCATC
CAGAGCTTACTCCTACCGGTGTGCTTTACACTGGACAAGTTGGATATGTCATAAGCGGAA
TGCGTTCAACTAAAGAAGCACGAATTGGTGATACTCTTCATCAAGCAAAGAGTATTGTCG
AACCACTTCCTGGTTTCAAGCCTGCTAGACACATGGTCTTCTCTGGTCTATACCCAGCTG
ATGGCTCTGACTTTGACGCTCTTAGCCATGCAATTGAAAAACTAACATGTAACGATGCGA
GTGTGTCTGTTACAAAAGAGACAAGCACTGCACTTGGCATGGGCTTCAGATGTGGCTTTC
TAGGATTACTACACATGGATGTATTTCATCAGCGGCTAGAACAAGAACATGGAGCTCAAG
TCATATCGACAATACCGACAGTGCCATATATCTTTGAGTATGGTGATGGAAGCAAAGTGC
AAGTCGAGAACCCTGCAGCTTTGGCTTCAAATCCTGGAAAGCGTATAGCAGCTTGTTGGG
AACCAACAGTCATTGCAACTATTATTATTCCTAGTGAGTATGTTGGGCCAGTAATTATGC
TTTGTTCAGAGAGGAGGGGCGAGCAGCAAGAATATACATTCATTGATGCCCAAAGGGCTT
TGTTGAAGTACCGATTACCATTGAGGGAAATCATTGTGGATTTCTACAATGAACTGAAAA
GCATAACATCTGGATATGCTACTTTTGATTATGAAGATTCTGAGTACCAACAGTCTGATC
TTGTTAAGATGGATATTTTACTTAATGGTCAGCCTGTTGATGCTATGGCAACAATAGTCC
ACAACCAGAAAGCTCAGAGAGTTGGACGAGAATTAGTGGATAAACTCAAGAAATTCATAG
AACGGCAAATGTTTGAGATCACTATACAAGCCGCAGTTGGTTCAAAGGTTATCGCAAGGG
AAACTCTGTCAGCAATGAGAAAGAACGTTCTGGCCAAGTGCTATGGTGGTGATATTACTC
GCAAAAAGAAGTTGCTAGAGAAGCAAAAAGAAGGGAAGAAGCGCATGAAGCGTGTAGGGT
CCGTTGATATTCCTCAAGAAGCATTTCATGAGCTATTAAAGGTCTCCAATTCAAAATAGA
TGCTGTGCTTAGTGCTGTAGCTGTCTAACAGCATGAGGGTGTGTTGTGGTGAAACACAAA
CAGCATGTTCTGGACTTCTAGTCATCTTCTGAAAGGTGCCTTTTGGTCTAATGAGTACAT
AATGATGTTTCTTAATGATAAGAGGAGACAAAGCACCATTTTGCCATCTTTTGCTGTGGC
AACATATTTTCATGTTGAGAAGCTAGCATTACCTTTTGTTTTTCATTGATTTTCACTGTA
CAGAATTCGGTGATGCCTGCTGAATCAGCAGTAGCGTCGGCTTACCCTTCTGATTCCTTA
ATTGGCACAGCCATTTAGCTGAATCTCATTTCTTTGTTCAAATTATGTTAAGAACTTTTT
GGGAGG