Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0144200-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:2336434:2338188:-1 gene:Os06g0144200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase homolog (EC 4.2.2.2). (Os06t0144200-01)
Sequence	ATGGATATATATACGACATCACATCACAGCACAATAATGGCAGCCTCCTCCGTCACGGGG AGCCGCCGCCTCTGCATTCTCTTCTACCTCCTCACTGTCGTCGCCACCGTGGTCACCGCG GCGTCGGCGCACACGGCGCACAACGCCACCGCCGACGAGGAGTACTGGGAGAAGCGCGCC GAGGAGGCCCGCTCGTTCAACCGCGCCGCCTACGTGAGCGACCCCGTCGCCACCCTGAAC CGCTTCAACGCCGACGTGCTCCGCGCCACCACGCGCCGCTCGCTGGCCAGGTACACCGGC CCGTGCATGGCGACCAACCCCATCGACCGCTGCTGGCGCTGCCGCGACGACTGGGCCACC GACCGGAAGCGGCTGGCGCGGTGCGTCCGTGGGTTCGGCCACAGGACCGTCGGCGGCGCC GCTGGCAAGATCTACGTGGTGACCGACGCCAGCGACGACGAGATGGTCATCCCGAGGAAA GGGACGCTCCGGTACGGCGTGATCCAGGACCGGCCGATGTGGATCGTGTTCGCGCGCGAC ATGATCATCCAGCTCCGGCAGGAGCTGATCGTGAACCACAACAAGACCATCGACGGCCGT GGCGCGCAGGTGCACATCACCGGCGCCCAGATCACGCTCCAGGGCGTCCAGCATGTGATC ATCCACAACGTCCACATCCACCACTCGGTGCCGCACGGCGGCGGCATGATCCGCGACTCC AAGCGCCACTACGGCCTCCGCACGCGCAGCGACGGCGACGGCATCTCCATCATGTCCTCC TCCAACATCTGGATCGACCACGTCTCCATGTCCAACTGCTCCGACGGCCTCATCGACGCC GTCAGCGGCTCCACCGCCATCACCATCTCCAACGGCCACTTCACCAAGCACGACCACGTC ATGCTCTTCGGCGCCAGCAACAGCGACGCCCAGGACGAGGTGATGCAGATCACCGTGGCG TTCAACCACTTCGGCAAGGGCCTTGTGCCGCGCTGCAGGTTCGGATTCTTCCACGTCGTC AACAACGACTACACGCACTGGCTCATGTACGCCATCGGTGGCAACATGAACCCGACGATC ATCAGCCAGGGGAACAGGTTCATCGCGCCCGACGACTTGAACGCCAAGGAGGTGACCAAG AGGGAGTACACGCCGTACGACGAGTACAAGGAGTGGGTGTGGAAGTCGCAGGGCGACGTG ATGATGAACGGCGCCTTCTTTAACGAGTCCGGCGGCCAGAACGAGCGCAGCTACGACCAG CTCGACTTCATCCCTGCCAAGCACGGCAAGTACGTCGGCCAGCTCACCAAGTTCGCCGGC ACGCTCAACTGCCACGTCGGCATGCCATGCTAA

Peptide Sequence

PEP ID	Os06t0144200-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:2336434:2338188:-1 gene:Os06g0144200 transcript:Os06t0144200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase homolog (EC 4.2.2.2). (Os06t0144200-01)
Sequence	MDIYTTSHHSTIMAASSVTGSRRLCILFYLLTVVATVVTAASAHTAHNATADEEYWEKRA EEARSFNRAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRCWRCRDDWAT DRKRLARCVRGFGHRTVGGAAGKIYVVTDASDDEMVIPRKGTLRYGVIQDRPMWIVFARD MIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDS KRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNCSDGLIDAVSGSTAITISNGHFTKHDHV MLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNNDYTHWLMYAIGGNMNPTI ISQGNRFIAPDDLNAKEVTKREYTPYDEYKEWVWKSQGDVMMNGAFFNESGGQNERSYDQ LDFIPAKHGKYVGQLTKFAGTLNCHVGMPC

Transcript Sequence

Transcript ID	Os06t0144200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:2336434:2338188:-1 gene:Os06g0144200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pectate lyase homolog (EC 4.2.2.2). (Os06t0144200-01)
Sequence	GCCGGTGGTGCCATCGTCCGCACGTACGGCGTCCGTCACCCGGCTGGGAGGTCTCACGAA ATTACGCACTTCCCTGAGACCTTCCCCGCGGTGACGCGTGCGTCGTCAGCCGGCGAGCCG GACCACCACAAATAAAGGCATACATTGATACATATGGATATATATACGACATCACATCAC AGCACAATAATGGCAGCCTCCTCCGTCACGGGGAGCCGCCGCCTCTGCATTCTCTTCTAC CTCCTCACTGTCGTCGCCACCGTGGTCACCGCGGCGTCGGCGCACACGGCGCACAACGCC ACCGCCGACGAGGAGTACTGGGAGAAGCGCGCCGAGGAGGCCCGCTCGTTCAACCGCGCC GCCTACGTGAGCGACCCCGTCGCCACCCTGAACCGCTTCAACGCCGACGTGCTCCGCGCC ACCACGCGCCGCTCGCTGGCCAGGTACACCGGCCCGTGCATGGCGACCAACCCCATCGAC CGCTGCTGGCGCTGCCGCGACGACTGGGCCACCGACCGGAAGCGGCTGGCGCGGTGCGTC CGTGGGTTCGGCCACAGGACCGTCGGCGGCGCCGCTGGCAAGATCTACGTGGTGACCGAC GCCAGCGACGACGAGATGGTCATCCCGAGGAAAGGGACGCTCCGGTACGGCGTGATCCAG GACCGGCCGATGTGGATCGTGTTCGCGCGCGACATGATCATCCAGCTCCGGCAGGAGCTG ATCGTGAACCACAACAAGACCATCGACGGCCGTGGCGCGCAGGTGCACATCACCGGCGCC CAGATCACGCTCCAGGGCGTCCAGCATGTGATCATCCACAACGTCCACATCCACCACTCG GTGCCGCACGGCGGCGGCATGATCCGCGACTCCAAGCGCCACTACGGCCTCCGCACGCGC AGCGACGGCGACGGCATCTCCATCATGTCCTCCTCCAACATCTGGATCGACCACGTCTCC ATGTCCAACTGCTCCGACGGCCTCATCGACGCCGTCAGCGGCTCCACCGCCATCACCATC TCCAACGGCCACTTCACCAAGCACGACCACGTCATGCTCTTCGGCGCCAGCAACAGCGAC GCCCAGGACGAGGTGATGCAGATCACCGTGGCGTTCAACCACTTCGGCAAGGGCCTTGTG CCGCGCTGCAGGTTCGGATTCTTCCACGTCGTCAACAACGACTACACGCACTGGCTCATG TACGCCATCGGTGGCAACATGAACCCGACGATCATCAGCCAGGGGAACAGGTTCATCGCG CCCGACGACTTGAACGCCAAGGAGGTGACCAAGAGGGAGTACACGCCGTACGACGAGTAC AAGGAGTGGGTGTGGAAGTCGCAGGGCGACGTGATGATGAACGGCGCCTTCTTTAACGAG TCCGGCGGCCAGAACGAGCGCAGCTACGACCAGCTCGACTTCATCCCTGCCAAGCACGGC AAGTACGTCGGCCAGCTCACCAAGTTCGCCGGCACGCTCAACTGCCACGTCGGCATGCCA TGCTAATTAACTAGACATATCAGCAACGATATGGAAGAGGACGAGAGAAAGCTAATTAAC CATGCCTTAATTTGTATATATATGAAAATCTGACAAATTTGTACATGTGTAAAACTTTAT AATTCTCAAAAGAGAAAAAAAAACGTACATTATATAC