Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0144000-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:2329883:2334421:1 gene:Os06g0144000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:X-ray repair cross complementing protein 1 description:BRCT domain containing protein. (Os06t0144000-01)
Sequence

ATGCCTGAATCGAGCTCAGATCCTAACAACGGGAGAGGAAAGTCATCCAAGAGGAATCTC
CCTTCTTGGATGGGTTCGAAAGACGGGGAGGAAAATCCAGGCAAGAAGAAGCACATGGCC
ACCCACGAGAAGGTGCAGAAAGGATCGGATTTCTCCAAACTTTTGGATGGGGTGGTCTTT
GTACTTTCAGGGTTTGTGAACCCTGAAAGAGGCACATTGCGCTCCCAAGCATTGGATATG
GGAGCCGAGTATCGACCCGATTGGACATCAGATTGCACACTTCTCGTTTGTGCATTTGCC
AATACCCCCAAGTTTCGACAAGTCGAATCGAACAATGGAACCATTGTCTCGAAGGACTGG
ATCTTAGAATCTCACAGCCAAAGAAAACTTGTTGATATTGAGCCTTACCTTATGCATGTT
GGAAAACCGTGGAGAAAAAATAAAGAGCTAGTTGAATCTGACGAAGATCAGAAGAAGCCA
CATAAAGAGCATCAGAAGCAAGTTGATCGATCTCATATCAAGACATCTCCCTCTGCAGGC
ATAGAGGCAAAACATTCAGATGTTACTAGTAAGCAATTTTCTCCAACAAAAATAAAACAA
TGGGCAAAGAATGATTTAGCACAGACAATATCATGGTTAGAGAGCCAAGAAGAGAAGCCA
GAACCAAATGAGTTGAAGGCAATAGCTGCTGAAGGGGTTATCACTTGTTTGCAAGATGCC
ATAGAATCTCTCAAGCAAGGGAATGATGTCAAGGGAGTGGCGGAGCAGTGGAGCTTTGTC
CCCCATGTCATCAATGAACTGGCGGAACTTGATGGAAGAAGAAAAGAGGGATCGTTATCG
AAAGAACAACTCTCCCAGCTAGCAATCAAATGCAAAAAGATTTATCAGGCTGAGTTTGCC
CACATGCATGATAATGACAAGAAGCATCAGAGCAAGCCTAGATCAGATGATGCTCAGTAT
GACAGTGATGACACCATCGAAATGACGGAAGAAGAGATTGATCTCGCATGCAGGCAACTC
CCTGGGGTATGCGGGAGGCAGTAG

Peptide Sequence

PEP ID

Os06t0144000-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:2329883:2334421:1 gene:Os06g0144000 transcript:Os06t0144000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:X-ray repair cross complementing protein 1 description:BRCT domain containing protein. (Os06t0144000-01)
Sequence

MPESSSDPNNGRGKSSKRNLPSWMGSKDGEENPGKKKHMATHEKVQKGSDFSKLLDGVVF
VLSGFVNPERGTLRSQALDMGAEYRPDWTSDCTLLVCAFANTPKFRQVESNNGTIVSKDW
ILESHSQRKLVDIEPYLMHVGKPWRKNKELVESDEDQKKPHKEHQKQVDRSHIKTSPSAG
IEAKHSDVTSKQFSPTKIKQWAKNDLAQTISWLESQEEKPEPNELKAIAAEGVITCLQDA
IESLKQGNDVKGVAEQWSFVPHVINELAELDGRRKEGSLSKEQLSQLAIKCKKIYQAEFA
HMHDNDKKHQSKPRSDDAQYDSDDTIEMTEEEIDLACRQLPGVCGRQ

Transcript Sequence

Transcript ID

Os06t0144000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:2329883:2334421:1 gene:Os06g0144000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:X-ray repair cross complementing protein 1 description:BRCT domain containing protein. (Os06t0144000-01)
Sequence

GTTTTTGCGACTTAAAACCCTCTCCTTGTTCTTCCCAACTTCGCAAGACGCGATTCAATG
GTGGACGAGATTGGAGCGGCAAAGAAGGGGTGAAGAGGTGAATCGCCCCTCTCTTTTCTT
GAGTTCTTGGTCAGGTTCGTAGTCAGTATGCCTGAATCGAGCTCAGATCCTAACAACGGG
AGAGGAAAGTCATCCAAGAGGAATCTCCCTTCTTGGATGGGTTCGAAAGACGGGGAGGAA
AATCCAGGCAAGAAGAAGCACATGGCCACCCACGAGAAGGTGCAGAAAGGATCGGATTTC
TCCAAACTTTTGGATGGGGTGGTCTTTGTACTTTCAGGGTTTGTGAACCCTGAAAGAGGC
ACATTGCGCTCCCAAGCATTGGATATGGGAGCCGAGTATCGACCCGATTGGACATCAGAT
TGCACACTTCTCGTTTGTGCATTTGCCAATACCCCCAAGTTTCGACAAGTCGAATCGAAC
AATGGAACCATTGTCTCGAAGGACTGGATCTTAGAATCTCACAGCCAAAGAAAACTTGTT
GATATTGAGCCTTACCTTATGCATGTTGGAAAACCGTGGAGAAAAAATAAAGAGCTAGTT
GAATCTGACGAAGATCAGAAGAAGCCACATAAAGAGCATCAGAAGCAAGTTGATCGATCT
CATATCAAGACATCTCCCTCTGCAGGCATAGAGGCAAAACATTCAGATGTTACTAGTAAG
CAATTTTCTCCAACAAAAATAAAACAATGGGCAAAGAATGATTTAGCACAGACAATATCA
TGGTTAGAGAGCCAAGAAGAGAAGCCAGAACCAAATGAGTTGAAGGCAATAGCTGCTGAA
GGGGTTATCACTTGTTTGCAAGATGCCATAGAATCTCTCAAGCAAGGGAATGATGTCAAG
GGAGTGGCGGAGCAGTGGAGCTTTGTCCCCCATGTCATCAATGAACTGGCGGAACTTGAT
GGAAGAAGAAAAGAGGGATCGTTATCGAAAGAACAACTCTCCCAGCTAGCAATCAAATGC
AAAAAGATTTATCAGGCTGAGTTTGCCCACATGCATGATAATGACAAGAAGCATCAGAGC
AAGCCTAGATCAGATGATGCTCAGTATGACAGTGATGACACCATCGAAATGACGGAAGAA
GAGATTGATCTCGCATGCAGGCAACTCCCTGGGGTATGCGGGAGGCAGTAGTTTTAGGTC
CGTTCTTCAGAAGATGCAGTAAGAATACTGAATATCCATCTTTCCCAATGGTGTATGTGT
CTGGGATCTGGATAGCTGCATGTGTAAACTGAACAAAATATGGTTAATCTAGATCAAAAT
TGCACC