Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0142600-01
CDS Infomation	cds chromosome:IRGSP-1.0:6:2234581:2239058:-1 gene:Os06g0142600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEADING DATE 3B description:Homolog of the Arabidopsis EARLY FLOWERING 3 protein, Photoperiodic flowering, Short-day/long-day promotion (Os06t0142600-01)
Sequence	ATGGCGACGAGGGGAGGAGGCGGAGGAGGAGGAGGGAAGGAGGCGAAGGGGAAGGTGATG GGCCCGCTGTTCCCGCGGCTCCACGTCAACGACGCGGCCAAGGGCGGAGGCCCGCGGGCG CCGCCCCGGAACAAGATGGCGCTCTACGAGCAGTTCACCGTGCCCTCGCATCGCTTCAGC GGCGGAGGAGGCGGCGGCGGAGTAGGAGGCAGCCCCGCGCACTCGACGTCGGCGGCGAGC CAGAGCCAGAGCCAGAGCCAGGTTTATGGACGTGACAGTTCTCTGTTCCAGCCGTTCAAT GTGCCTTCCAATCGACCTGGCCATTCTACTGAAAAGATCAATTCAGATAAGATCAACAAG AAGATTAGTGGTTCAAGAAAAGAACTGGGGATGTTATCCTCTCAGACTAAGGGCATGGAT ATTTATGCTTCAAGATCAACTGCTGAGGCACCACAAAGAAGAGCAGAAAATACAATAAAG AGTTCTTCGGGAAAGAGATTGGCCGATGATGATGAATTTATGGTTCCTTCTGTCTTCAAT TCCAGATTTCCTCAATATAGTACTCAAGAGAATGCAGGGGTTCAAGACCAATCAACACCC CTTGTTGCTGCAAATCCACACAAAAGCCCTTCAACAGTGTCCAAATCATCCACAAAGTGT TATAACACTGTTAGCAAGAAATTGGAGAGAATCCATGTTTCTGATGTGAAATCAAGGACC CCTTTGAAAGACAAGGAGATGGAAGCAGCACAGACATCCAAAAACGTGGAAGTTGAAAAA AGTTCATCCTTTCATGCTTCCAAAGATATGTTTGAAAGCAGGCATGCTAAAGTATATCCT AAGATGGATAAGACGGGCATTATAAATGATTCTGATGAGCCACATGGTGGAAATAGTGGG CATCAAGCGACAAGCAGAAATGGAGGTTCCATGAAATTTCAGAACCCTCCAATGAGAAGA AATGAAATTTCCTCTAATCCATCTTCTGAAAATACTGATAGGCATTATAATTTACCGCAA GGAGGCATAGAGGAAACAGGTACAAAGAGAAAAAGGTTGCTAGAACAACACGATGCAGAG AAAAGTGATGATGTGTCAAGGTTGCTAGAACAACACGATGCAGAGAACATTGATGATGTG TCTGATTCCTCGGTGGAGTGTATAACTGGTTGGGAGATTTCTCCAGATAAAATTGTTGGA GCCATTGGTACAAAGCATTTCTGGAAAGCAAGACGTGCTATTATGAATCAACAGAGGGTG TTTGCTGTCCAGGTTTTTGAGCTGCATAAGTTGGTAAAAGTGCAGAAGTTGATTGCAGCA TCGCCACATGTACTTATTGAAAGTGATCCTTGCCTTGGCAATGCCTTGTTGGGTAGCAAG AACAAGCTGGTGGAAGAAAACCTGAAAGCACAACCTCTTTTAGTCGCAACCATCGATGAC GTGGAGCCAAGTCTACAGCAACCGGAGGTATCAAAAGAAAACACTGAAGACAGCCCACCC TCCCCTCATGATACTGGGCTTGGCAGTGGTCAACGTGATCAAGCTGCAACAAATGGCGTC TCTAAAAGCAATCGTCGAGCTACACCTGTTGCTTCTGATAACAAACAAAATAACTGGGGC GTTCAACTTCAACCACCTCAAAATCAATGGCTTGTCCCTGTCATGTCTCCTTTGGAAGGC CTTGTCTATAAGCCTTATTCTGGTCCGTGCCCTCCAGCTGGTAGCATATTGGCCCCGTTT TATGCCAACTGTACTCCTTTGAGTCTTCCATCAACAGCTGGAGATTTCATGAACTCGGCA TACGGTGTTCCTATGCCTCATCAGCCACAACATATGGGTGCTCCTGGCCCTCCTTCCATG CCTATGAACTACTTCCCGCCTTTCAGCATACCAGTGATGAACCCAACTGCACCGGCACCT GTAGTCGAACAAGGGAGACATCCTTCGATGCCACAGCCTTATGGGAACTTTGAGCAGCAG TCGTGGATCTCATGTAACATGTCACATCCAAGTGGCATTTGGAGATTTCATGCCTCAAGA GATAGCGAGGCACAGGCCAGCAGCGCTAGCAGTCCTTTTGACAGGTTCCAATGCAGTGGA AGTGGTCCTGTATCCGCCTTCCCCACAGTATCAGCTCAGAACAACCAGCCTCAGCCCTCA TATAGCAGCCGGGACAACCAGACCAATGTTATCAAGGTTGTTCCACATAATTCACGAACT GCTTCAGAGTCAGCAGCACGGATTTTCCGGTCAATACAAATGGAACGGCAACGAGATGAT TGA

Peptide Sequence

PEP ID	Os06t0142600-01
PEP Infomation	pep chromosome:IRGSP-1.0:6:2234581:2239058:-1 gene:Os06g0142600 transcript:Os06t0142600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEADING DATE 3B description:Homolog of the Arabidopsis EARLY FLOWERING 3 protein, Photoperiodic flowering, Short-day/long-day promotion (Os06t0142600-01)
Sequence	MATRGGGGGGGGKEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRNKMALYEQFTVPSHRFS GGGGGGGVGGSPAHSTSAASQSQSQSQVYGRDSSLFQPFNVPSNRPGHSTEKINSDKINK KISGSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIKSSSGKRLADDDEFMVPSVFN SRFPQYSTQENAGVQDQSTPLVAANPHKSPSTVSKSSTKCYNTVSKKLERIHVSDVKSRT PLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPHGGNSG HQATSRNGGSMKFQNPPMRRNEISSNPSSENTDRHYNLPQGGIEETGTKRKRLLEQHDAE KSDDVSRLLEQHDAENIDDVSDSSVECITGWEISPDKIVGAIGTKHFWKARRAIMNQQRV FAVQVFELHKLVKVQKLIAASPHVLIESDPCLGNALLGSKNKLVEENLKAQPLLVATIDD VEPSLQQPEVSKENTEDSPPSPHDTGLGSGQRDQAATNGVSKSNRRATPVASDNKQNNWG VQLQPPQNQWLVPVMSPLEGLVYKPYSGPCPPAGSILAPFYANCTPLSLPSTAGDFMNSA YGVPMPHQPQHMGAPGPPSMPMNYFPPFSIPVMNPTAPAPVVEQGRHPSMPQPYGNFEQQ SWISCNMSHPSGIWRFHASRDSEAQASSASSPFDRFQCSGSGPVSAFPTVSAQNNQPQPS YSSRDNQTNVIKVVPHNSRTASESAARIFRSIQMERQRDD

Transcript Sequence

Transcript ID	Os06t0142600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:2234581:2239058:-1 gene:Os06g0142600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HEADING DATE 3B description:Homolog of the Arabidopsis EARLY FLOWERING 3 protein, Photoperiodic flowering, Short-day/long-day promotion (Os06t0142600-01)
Sequence	ATGGCGACGAGGGGAGGAGGCGGAGGAGGAGGAGGGAAGGAGGCGAAGGGGAAGGTGATG GGCCCGCTGTTCCCGCGGCTCCACGTCAACGACGCGGCCAAGGGCGGAGGCCCGCGGGCG CCGCCCCGGAACAAGATGGCGCTCTACGAGCAGTTCACCGTGCCCTCGCATCGCTTCAGC GGCGGAGGAGGCGGCGGCGGAGTAGGAGGCAGCCCCGCGCACTCGACGTCGGCGGCGAGC CAGAGCCAGAGCCAGAGCCAGGTTTATGGACGTGACAGTTCTCTGTTCCAGCCGTTCAAT GTGCCTTCCAATCGACCTGGCCATTCTACTGAAAAGATCAATTCAGATAAGATCAACAAG AAGATTAGTGGTTCAAGAAAAGAACTGGGGATGTTATCCTCTCAGACTAAGGGCATGGAT ATTTATGCTTCAAGATCAACTGCTGAGGCACCACAAAGAAGAGCAGAAAATACAATAAAG AGTTCTTCGGGAAAGAGATTGGCCGATGATGATGAATTTATGGTTCCTTCTGTCTTCAAT TCCAGATTTCCTCAATATAGTACTCAAGAGAATGCAGGGGTTCAAGACCAATCAACACCC CTTGTTGCTGCAAATCCACACAAAAGCCCTTCAACAGTGTCCAAATCATCCACAAAGTGT TATAACACTGTTAGCAAGAAATTGGAGAGAATCCATGTTTCTGATGTGAAATCAAGGACC CCTTTGAAAGACAAGGAGATGGAAGCAGCACAGACATCCAAAAACGTGGAAGTTGAAAAA AGTTCATCCTTTCATGCTTCCAAAGATATGTTTGAAAGCAGGCATGCTAAAGTATATCCT AAGATGGATAAGACGGGCATTATAAATGATTCTGATGAGCCACATGGTGGAAATAGTGGG CATCAAGCGACAAGCAGAAATGGAGGTTCCATGAAATTTCAGAACCCTCCAATGAGAAGA AATGAAATTTCCTCTAATCCATCTTCTGAAAATACTGATAGGCATTATAATTTACCGCAA GGAGGCATAGAGGAAACAGGTACAAAGAGAAAAAGGTTGCTAGAACAACACGATGCAGAG AAAAGTGATGATGTGTCAAGGTTGCTAGAACAACACGATGCAGAGAACATTGATGATGTG TCTGATTCCTCGGTGGAGTGTATAACTGGTTGGGAGATTTCTCCAGATAAAATTGTTGGA GCCATTGGTACAAAGCATTTCTGGAAAGCAAGACGTGCTATTATGAATCAACAGAGGGTG TTTGCTGTCCAGGTTTTTGAGCTGCATAAGTTGGTAAAAGTGCAGAAGTTGATTGCAGCA TCGCCACATGTACTTATTGAAAGTGATCCTTGCCTTGGCAATGCCTTGTTGGGTAGCAAG AACAAGCTGGTGGAAGAAAACCTGAAAGCACAACCTCTTTTAGTCGCAACCATCGATGAC GTGGAGCCAAGTCTACAGCAACCGGAGGTATCAAAAGAAAACACTGAAGACAGCCCACCC TCCCCTCATGATACTGGGCTTGGCAGTGGTCAACGTGATCAAGCTGCAACAAATGGCGTC TCTAAAAGCAATCGTCGAGCTACACCTGTTGCTTCTGATAACAAACAAAATAACTGGGGC GTTCAACTTCAACCACCTCAAAATCAATGGCTTGTCCCTGTCATGTCTCCTTTGGAAGGC CTTGTCTATAAGCCTTATTCTGGTCCGTGCCCTCCAGCTGGTAGCATATTGGCCCCGTTT TATGCCAACTGTACTCCTTTGAGTCTTCCATCAACAGCTGGAGATTTCATGAACTCGGCA TACGGTGTTCCTATGCCTCATCAGCCACAACATATGGGTGCTCCTGGCCCTCCTTCCATG CCTATGAACTACTTCCCGCCTTTCAGCATACCAGTGATGAACCCAACTGCACCGGCACCT GTAGTCGAACAAGGGAGACATCCTTCGATGCCACAGCCTTATGGGAACTTTGAGCAGCAG TCGTGGATCTCATGTAACATGTCACATCCAAGTGGCATTTGGAGATTTCATGCCTCAAGA GATAGCGAGGCACAGGCCAGCAGCGCTAGCAGTCCTTTTGACAGGTTCCAATGCAGTGGA AGTGGTCCTGTATCCGCCTTCCCCACAGTATCAGCTCAGAACAACCAGCCTCAGCCCTCA TATAGCAGCCGGGACAACCAGACCAATGTTATCAAGGTTGTTCCACATAATTCACGAACT GCTTCAGAGTCAGCAGCACGGATTTTCCGGTCAATACAAATGGAACGGCAACGAGATGAT TGA