Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0140400-02
CDS Infomation	cds chromosome:IRGSP-1.0:6:2123595:2124781:1 gene:Os06g0140400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 28 description:Similar to HAHB-6 (Fragment). (Os06t0140400-01);Similar to HAHB-6 (Fragment). (Os06t0140400-02)
Sequence	ATGGAGAGGCAAGGCTTGGATCTTGGCCTGAGCCTCGGGCTAGGCTTGACGACGGCGGCG ACATGGCCGGCTGCTGGGTTCTGTCTGAACTCCGGCATGGCGGAGCAGGAAGTGATCAGG CGTGATGATGTGGTTGCGGCGACGGCGGCGGAGGATGAGAGGTTCGCGTGCTCACCCGGC AGCCCGGTGTCGAGCGGCAGCGGGAAGCGAGGCAGCGGCAGCGGCAGCGGCGACGAGGTC GACGACGCCGGCTGCGACGTCGGCGGCGGCGGCGCGCGCAAGAAGCTGCGGTTGTCCAAG GACCAGGCCGCCGTCCTCGAGGAGTGCTTCAAGACGCACCACACCCTCACTCCGAAGCAG AAGGTGGCGCTGGCGAAGAGCTTGAACCTGCGGCCGCGGCAGGTGGAGGTGTGGTTCCAG AACCGCCGCGCGAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGCACCTCAAGCGG TGGTGCGACCAGCTCGCCGACGACAACCGCCGCCTCCACAAGGAGCTCGCCGAGCTCAGG GCGCTCAAGGCCACGCCCACACCGCCCGCCGCCGCGCCGCCATTGACCACCCTCACAATG TGCCTCTCCTGCAAGCGCGTCGCCAATGCCGGCGTGCCCTCGCCGGCGGCGGCGATATTC CCCGGCCACCCCCAGTTCTTGTGCGGATTCAGAGATCACGCCGGAGCAGCGTCGTCGTCG TACGGCGGCGCATCATCTGGACTCGCGAAGGCGGTCAGGGCGGCGAGGTAG

Peptide Sequence

PEP ID	Os06t0140400-02
PEP Infomation	pep chromosome:IRGSP-1.0:6:2123595:2124781:1 gene:Os06g0140400 transcript:Os06t0140400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 28 description:Similar to HAHB-6 (Fragment). (Os06t0140400-01);Similar to HAHB-6 (Fragment). (Os06t0140400-02)
Sequence	MERQGLDLGLSLGLGLTTAATWPAAGFCLNSGMAEQEVIRRDDVVAATAAEDERFACSPG SPVSSGSGKRGSGSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQ KVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR ALKATPTPPAAAPPLTTLTMCLSCKRVANAGVPSPAAAIFPGHPQFLCGFRDHAGAASSS YGGASSGLAKAVRAAR

Transcript Sequence

Transcript ID	Os06t0140400-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:2123595:2124781:1 gene:Os06g0140400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 28 description:Similar to HAHB-6 (Fragment). (Os06t0140400-01);Similar to HAHB-6 (Fragment). (Os06t0140400-02)
Sequence	ATCGTCTCCGACGCCGACGAACTCCCACTCACTAGTAGCACTTACTTGTAGCTATTGATC TAGAGCACTTAAGACATGGAGAGGCAAGGCTTGGATCTTGGCCTGAGCCTCGGGCTAGGC TTGACGACGGCGGCGACATGGCCGGCTGCTGGGTTCTGTCTGAACTCCGGCATGGCGGAG CAGGAAGTGATCAGGCGTGATGATGTGGTTGCGGCGACGGCGGCGGAGGATGAGAGGTTC GCGTGCTCACCCGGCAGCCCGGTGTCGAGCGGCAGCGGGAAGCGAGGCAGCGGCAGCGGC AGCGGCGACGAGGTCGACGACGCCGGCTGCGACGTCGGCGGCGGCGGCGCGCGCAAGAAG CTGCGGTTGTCCAAGGACCAGGCCGCCGTCCTCGAGGAGTGCTTCAAGACGCACCACACC CTCACTCCGAAGCAGAAGGTGGCGCTGGCGAAGAGCTTGAACCTGCGGCCGCGGCAGGTG GAGGTGTGGTTCCAGAACCGCCGCGCGAGGACGAAGCTGAAGCAGACGGAGGTGGACTGC GAGCACCTCAAGCGGTGGTGCGACCAGCTCGCCGACGACAACCGCCGCCTCCACAAGGAG CTCGCCGAGCTCAGGGCGCTCAAGGCCACGCCCACACCGCCCGCCGCCGCGCCGCCATTG ACCACCCTCACAATGTGCCTCTCCTGCAAGCGCGTCGCCAATGCCGGCGTGCCCTCGCCG GCGGCGGCGATATTCCCCGGCCACCCCCAGTTCTTGTGCGGATTCAGAGATCACGCCGGA GCAGCGTCGTCGTCGTACGGCGGCGCATCATCTGGACTCGCGAAGGCGGTCAGGGCGGCG AGGTAGATCGATCGATGCGCGCGCCGCCATGATCGACATGACCAAGCTAGCGATCTCTAG CTAGAAGATGATGACATTGAGCAAGACGCAAGAGTAGAACAGAGTTGAATTGATCTCTCG TTTTCCTGTGTATTTTTAAGGATCAAGTGCAAAGTTAATTTAGTTTTTGACAAATGTAGG ATGGATCCATGTATGCACATGAAAAGTTGATGAAATAACATGAGAAGAACTAATT