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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0139900-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:2091289:2094645:-1 gene:Os06g0139900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta 1 subunit of 20S proteasome. (Os06t0139900-01)
Sequence

ATGGACGCCTCTCTCATGGGCTCCCCCTCTCCCGCCGCGGGCGACGCCCCCACCTCCGGG
GAGCACCGGATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCC
GCCGACTCCCGGACCAGCACCGGAATGTATGTGGCGAACCGTGCATCTGACAAAATTACT
CAACTGACTGACAATGTGTACGTCTGCCGCTCTGGATCTGCTGCCGACACACAAGTCATT
TCGGAATATGTACGCTATTTTCTCCACCAACACACAATTCAGCTTGGGCAACCAGCTACT
GTGAAAGTTGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAGAACATGTTGCAA
GCTGGCATGATTGTTGGTGGATGGGATAAATATGAGGGTGGCCAAATTTTCTCAGTCCCC
CTTGGTGGAACAATTCTGAGGCAACCATTTGCAATTGGAGGTTCTGGTTCCAGTTACCTG
TATGGACTGCTTGACCATGAATGGAAGGAGGGCATGTCCCAGGAAGAAGCTGAGAAGTTT
GTGGTGAAGGTGGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGT
ACAGTCACCATAAATGCCGATGGTGTTTCGAGGAAATTTCACCCTGGTGACAAACTACCA
CTCTGGCATGAAGAGATGGAGCCCCAGAACTCGTTGCTCGACATACTTGCTGCTGGGAAC
CCTGATCCGATGGTCCAGTGA

Peptide Sequence

PEP ID

Os06t0139900-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:2091289:2094645:-1 gene:Os06g0139900 transcript:Os06t0139900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta 1 subunit of 20S proteasome. (Os06t0139900-01)
Sequence

MDASLMGSPSPAAGDAPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKIT
QLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQ
AGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKF
VVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLPLWHEEMEPQNSLLDILAAGN
PDPMVQ

Transcript Sequence

Transcript ID

Os06t0139900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:2091289:2094645:-1 gene:Os06g0139900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Beta 1 subunit of 20S proteasome. (Os06t0139900-01)
Sequence

CTCTTTTTTTCTTTCTTGCGGTGGCGGCCAAAGCCAGCGAACACCTGAGCTCTCTCGCCG
CCGCGCCGCTTAGGGGTTTTCCGCCGCCGCATCCGCCGATCTCCCCGCCGCCATGGACGC
CTCTCTCATGGGCTCCCCCTCTCCCGCCGCGGGCGACGCCCCCACCTCCGGGGAGCACCG
GATGGGGACCACCATCGTCGGCGTCTGCTACGACGGCGGCGTCGTCCTCGCCGCCGACTC
CCGGACCAGCACCGGAATGTATGTGGCGAACCGTGCATCTGACAAAATTACTCAACTGAC
TGACAATGTGTACGTCTGCCGCTCTGGATCTGCTGCCGACACACAAGTCATTTCGGAATA
TGTACGCTATTTTCTCCACCAACACACAATTCAGCTTGGGCAACCAGCTACTGTGAAAGT
TGCAGCCAACTTAATTAGGTTGTTGGCTTATCAGAACAAGAACATGTTGCAAGCTGGCAT
GATTGTTGGTGGATGGGATAAATATGAGGGTGGCCAAATTTTCTCAGTCCCCCTTGGTGG
AACAATTCTGAGGCAACCATTTGCAATTGGAGGTTCTGGTTCCAGTTACCTGTATGGACT
GCTTGACCATGAATGGAAGGAGGGCATGTCCCAGGAAGAAGCTGAGAAGTTTGTGGTGAA
GGTGGTTTCCCTTGCTATAGCCCGTGATGGTGCTAGTGGAGGGGTTGTTCGTACAGTCAC
CATAAATGCCGATGGTGTTTCGAGGAAATTTCACCCTGGTGACAAACTACCACTCTGGCA
TGAAGAGATGGAGCCCCAGAACTCGTTGCTCGACATACTTGCTGCTGGGAACCCTGATCC
GATGGTCCAGTGATTCAGCCATACACCACCATTCTTTTCCAACTTTCTACTGTATCTGAC
TTGCTCTAGATTTTTACTGAACTGGACTGCAGAATTGTTCCACACCGACTTGTTGTTACT
CTTTATTATTTTAACTTAGTAAATTCTCGGTTGCTCGGT