Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0138200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:2030471:2034739:1 gene:Os06g0138200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0138200-01);Similar to Oxidoreductase. (Os06t0138200-02)
Sequence

ATGGACGCCTCCTCCTCCGCCTCCGCCGGCGGCGAGGCCGACGCGATGGCGCTCGTGCAG
GGGTACAACGCCGACGAGCTCGCCATCGCCGGGGAGTTCCTCACCACGTGGCTCCCCTTC
CTCTCCGCGGGCCTCTGCGCCTCCTGCGCCGACTCCCTCCGCAGCCGCGTCTCCTCCCTG
CTGCCCCCGCAAGCCGAGGAATCCCCGTCGTCGCCGCCGCCGCGGATCGATCAGATTGAG
CCCTCGGGGTGGGAGTCCGATCCGGCTACGGCTCACCCGCAGCATCTGCCGTTCGAGCCG
AGCGGATGGGACTCGGATCCGCCGCAGCTGCCACCGGAGCAGGAGCAGCAGAAGCAGAAG
CCGCAGCCGGCGGAGAAGCCGCGGAAGTCGTGGGCAGACATGGCTCAGGAGGACGAGCTC
GCCGCCGCGGCAGAGGAGGACGCGGCGGCAGCCGCGGCTGATGACGGCGAGGAAGGGAGC
GAGGCTGGTAGGCCGGGTGTGCAGCTGACGAGGGAGCAGCGGGAGCTGAGGCGGTTCCGG
AACGTGGTGCGGAGGAAGGATTTCATCTGTTTTGAGAGGGTCAATGGTCGGCTCGTCAAT
ATCCTCGCTGGCCTGGAACTTCATTGCGGTGTGTTTAGCGCGGCCGAACAGAAGCGTATT
GTCGACTACGTATACGATCTTCAGGAGATGGGCAAGCACGGGGAGCTTGGAGATCGTACG
TATACGGAACCCCAAAGGTGGATGCGTGGTAAAGGGCGAGTAACAATCCAATTTGGATGC
TGTTATAATTATGCCACGGACAAGAATGGAAACCCACCAGGCATTATTCGAACTATTGCT
TCTGATCCGATGCCTAGCTTATTTAAGATCATGATCAAGAGATTGGTACGGTGGCATGTT
CTACCAAAGACTTGCATACCAGACAGTTGTATTGTCAATATATATGACCCTGGAGATTGC
ATCCCACCACATATTGATAGTCATGATTTTGTTCGGCCATTCTGTACTGTTTCATTCCTC
AGTGAGTGCAACATTCTTTTTGGATCTACTCTGAAAATTGCTGGCCCTGGAGAGTTCACT
GGTTCACTTCCAATTCCTCTGCCTGTTGGGTCGGTGCTTATCCTAAATGGCAATGGTGCT
GATGTAGCAAAGCATTGTGTTCCTGCAGTTCCGACCAAAAGGATATCCATTACCTTCAGA
AAGATGGATCCAGCGAAGCGTCCGTTCAATTTCCGAGATGATCCAGAATTGCTTAACATA
ATTCCTCTAGAAACAGCTGTACAAGAAACTGGCAGATCATCAGATGAAGGTAAGGGCAAG
CAGCCTGACATACAGATCAGAAATCCGAGCAAAGCACACAGGAACAAGAAATCTAAAGTA
AGAACATCTCCTGGAAAGGGTGGACGGGGCGGCATTCTCGGAGATGGACCTCCTCAATAT
GCACAAGCTCAAGTCACTGGCATTTCGTCACAGCAAAACTTCCATGGCCAGCCTACCATC
TCTGGTTCAAGTGCTGAGAGAGAAAGACGCCCTGTTGGTCCATTGAGAGAGTCAAGATAT
CAGCAGGATGCACCTGGCATGCAATCTAACATGGATGGTATCAGAGAGCGGGCAAATTGG
TTGGCTCAAGAGAGGATGCATGGTAACAGCATGAATTCGATTGACGATGGCACGGAATCT
CAGGAAAGGAGGCAGCGAATGGAGCACAGACAGATATTGATGATCAACCGCACGATCAAC
GATGATATGGATTCCCTTTCAATCGGGAGCCATGAATCTGACCAGACTCGTGTAAGCGTA
CGAACACTATACAACAAGCCAAGGAGGACCAGGGTAAACCTGGATGAGTAA

Peptide Sequence

PEP ID

Os06t0138200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:2030471:2034739:1 gene:Os06g0138200 transcript:Os06t0138200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0138200-01);Similar to Oxidoreductase. (Os06t0138200-02)
Sequence

MDASSSASAGGEADAMALVQGYNADELAIAGEFLTTWLPFLSAGLCASCADSLRSRVSSL
LPPQAEESPSSPPPRIDQIEPSGWESDPATAHPQHLPFEPSGWDSDPPQLPPEQEQQKQK
PQPAEKPRKSWADMAQEDELAAAAEEDAAAAAADDGEEGSEAGRPGVQLTREQRELRRFR
NVVRRKDFICFERVNGRLVNILAGLELHCGVFSAAEQKRIVDYVYDLQEMGKHGELGDRT
YTEPQRWMRGKGRVTIQFGCCYNYATDKNGNPPGIIRTIASDPMPSLFKIMIKRLVRWHV
LPKTCIPDSCIVNIYDPGDCIPPHIDSHDFVRPFCTVSFLSECNILFGSTLKIAGPGEFT
GSLPIPLPVGSVLILNGNGADVAKHCVPAVPTKRISITFRKMDPAKRPFNFRDDPELLNI
IPLETAVQETGRSSDEGKGKQPDIQIRNPSKAHRNKKSKVRTSPGKGGRGGILGDGPPQY
AQAQVTGISSQQNFHGQPTISGSSAERERRPVGPLRESRYQQDAPGMQSNMDGIRERANW
LAQERMHGNSMNSIDDGTESQERRQRMEHRQILMINRTINDDMDSLSIGSHESDQTRVSV
RTLYNKPRRTRVNLDE

Transcript Sequence

Transcript ID

Os06t0138200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:2030471:2034739:1 gene:Os06g0138200 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os06t0138200-01);Similar to Oxidoreductase. (Os06t0138200-02)
Sequence

GGGTGGGGCCCACACGGCAGCGAGAGACGCTTCGATGGACGCCTCCTCCTCCGCCTCCGC
CGGCGGCGAGGCCGACGCGATGGCGCTCGTGCAGGGGTACAACGCCGACGAGCTCGCCAT
CGCCGGGGAGTTCCTCACCACGTGGCTCCCCTTCCTCTCCGCGGGCCTCTGCGCCTCCTG
CGCCGACTCCCTCCGCAGCCGCGTCTCCTCCCTGCTGCCCCCGCAAGCCGAGGAATCCCC
GTCGTCGCCGCCGCCGCGGATCGATCAGATTGAGCCCTCGGGGTGGGAGTCCGATCCGGC
TACGGCTCACCCGCAGCATCTGCCGTTCGAGCCGAGCGGATGGGACTCGGATCCGCCGCA
GCTGCCACCGGAGCAGGAGCAGCAGAAGCAGAAGCCGCAGCCGGCGGAGAAGCCGCGGAA
GTCGTGGGCAGACATGGCTCAGGAGGACGAGCTCGCCGCCGCGGCAGAGGAGGACGCGGC
GGCAGCCGCGGCTGATGACGGCGAGGAAGGGAGCGAGGCTGGTAGGCCGGGTGTGCAGCT
GACGAGGGAGCAGCGGGAGCTGAGGCGGTTCCGGAACGTGGTGCGGAGGAAGGATTTCAT
CTGTTTTGAGAGGGTCAATGGTCGGCTCGTCAATATCCTCGCTGGCCTGGAACTTCATTG
CGGTGTGTTTAGCGCGGCCGAACAGAAGCGTATTGTCGACTACGTATACGATCTTCAGGA
GATGGGCAAGCACGGGGAGCTTGGAGATCGTACGTATACGGAACCCCAAAGGTGGATGCG
TGGTAAAGGGCGAGTAACAATCCAATTTGGATGCTGTTATAATTATGCCACGGACAAGAA
TGGAAACCCACCAGGCATTATTCGAACTATTGCTTCTGATCCGATGCCTAGCTTATTTAA
GATCATGATCAAGAGATTGGTACGGTGGCATGTTCTACCAAAGACTTGCATACCAGACAG
TTGTATTGTCAATATATATGACCCTGGAGATTGCATCCCACCACATATTGATAGTCATGA
TTTTGTTCGGCCATTCTGTACTGTTTCATTCCTCAGTGAGTGCAACATTCTTTTTGGATC
TACTCTGAAAATTGCTGGCCCTGGAGAGTTCACTGGTTCACTTCCAATTCCTCTGCCTGT
TGGGTCGGTGCTTATCCTAAATGGCAATGGTGCTGATGTAGCAAAGCATTGTGTTCCTGC
AGTTCCGACCAAAAGGATATCCATTACCTTCAGAAAGATGGATCCAGCGAAGCGTCCGTT
CAATTTCCGAGATGATCCAGAATTGCTTAACATAATTCCTCTAGAAACAGCTGTACAAGA
AACTGGCAGATCATCAGATGAAGGTAAGGGCAAGCAGCCTGACATACAGATCAGAAATCC
GAGCAAAGCACACAGGAACAAGAAATCTAAAGTAAGAACATCTCCTGGAAAGGGTGGACG
GGGCGGCATTCTCGGAGATGGACCTCCTCAATATGCACAAGCTCAAGTCACTGGCATTTC
GTCACAGCAAAACTTCCATGGCCAGCCTACCATCTCTGGTTCAAGTGCTGAGAGAGAAAG
ACGCCCTGTTGGTCCATTGAGAGAGTCAAGATATCAGCAGGATGCACCTGGCATGCAATC
TAACATGGATGGTATCAGAGAGCGGGCAAATTGGTTGGCTCAAGAGAGGATGCATGGTAA
CAGCATGAATTCGATTGACGATGGCACGGAATCTCAGGAAAGGAGGCAGCGAATGGAGCA
CAGACAGATATTGATGATCAACCGCACGATCAACGATGATATGGATTCCCTTTCAATCGG
GAGCCATGAATCTGACCAGACTCGTGTAAGCGTACGAACACTATACAACAAGCCAAGGAG
GACCAGGGTAAACCTGGATGAGTAAGCAAGCAAGCCAAGCCTGTACTCAAATCTGTGAAC
TTGCTTTTGCTAAAAAAGAAAAAAAAAACTGTGAACTTGCTGTTGGGAATGTTGATACCT
GAAAGCATACTTGCGCTGTATATTTCAGGAGGTGTGACCAGAACACCAGCAGATATAACT
TACTAAAACACTTAGTATTGATTTGATGAAATTTGTCAGCTGATAGTCAGGCCCCTATTC
TGTAGATAAGAGTATTTTTTGGGAATGCTGTAATTGTGACTTAATATGGATGCATTTCTC
GTTGATGAATGAGGACCTCTCAATAATTTGATTCCACTGTGACCACAACATTTCTTCC