Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0136900-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1962306:1963580:-1 gene:Os06g0136900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEPRESSED PALEA 1 description:Protein of unknown function DUF296 domain containing protein. (Os06t0136900-01)
Sequence

ATGGATCCGGTGACGGCGGCGGCGGCGCATGGGGGTGGGCACCACCACCACCACCACTTC
GGAGCGCCACCGGTGGCGGCGTTCCACCACCACCCGTTCCACCACGGCGGCGGGGCGCAC
TACCCGGCGGCGTTCCAGCAGTTTCAGGAGGAGCAGCAGCAGCTTGTGGCGGCGGCGGCG
GCGGCTGGTGGGATGGCGAAGCAGGAGCTGGTGGATGAGAGCAACAACACCATCAACAGC
GGCGGGAGCAACGGGAGCGGCGGGGAGGAGCAGAGGCAGCAGTCCGGGGAGGAGCAGCAC
CAGCAAGGGGCGGCGGCGCCGGTGGTGATCCGGCGTCCCAGGGGCCGCCCCGCCGGCTCC
AAGAACAAGCCCAAGCCTCCGGTCATCATCACGCGCGACAGCGCCAGCGCGCTGCGGGCG
CACGTCCTCGAGGTCGCCTCCGGGTGCGACCTCGTCGACAGCGTCGCCACGTTCGCGCGC
CGCCGCCAGGTCGGTGTCTGCGTGCTCAGCGCCACCGGCGCCGTCACCAACGTCTCCGTC
CGGCAGCCCGGCGCGGGCCCCGGCGCCGTCGTCAACCTCACCGGCCGCTTCGACATCCTC
TCGCTGTCCGGCTCCTTCCTCCCGCCGCCGGCGCCTCCCTCCGCCACCGGCCTCACCGTC
TACGTCTCCGGCGGCCAGGGGCAGGTCGTGGGCGGCACGGTCGCCGGACCGCTCATCGCC
GTCGGCCCCGTCGTCATCATGGCCGCCTCGTTCGGGAACGCCGCCTACGAGCGCCTCCCG
CTCGAGGACGACGAGCCGCCGCAGCACATGGCGGGCGGCGGCCAGTCCTCGCCGCCGCCG
CCGCCGCTGCCATTACCACCACACCAGCAGCCGATTCTTCAAGACCATCTGCCACACAAC
CTGATGAACGGAATCCACCTCCCCGGCGACGCCGCCTACGGCTGGACCAGCGGCGGCGGC
GGCGGCGGCCGCGCGGCGCCGTACTGA

Peptide Sequence

PEP ID

Os06t0136900-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1962306:1963580:-1 gene:Os06g0136900 transcript:Os06t0136900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEPRESSED PALEA 1 description:Protein of unknown function DUF296 domain containing protein. (Os06t0136900-01)
Sequence

MDPVTAAAAHGGGHHHHHHFGAPPVAAFHHHPFHHGGGAHYPAAFQQFQEEQQQLVAAAA
AAGGMAKQELVDESNNTINSGGSNGSGGEEQRQQSGEEQHQQGAAAPVVIRRPRGRPAGS
KNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLSATGAVTNVSV
RQPGAGPGAVVNLTGRFDILSLSGSFLPPPAPPSATGLTVYVSGGQGQVVGGTVAGPLIA
VGPVVIMAASFGNAAYERLPLEDDEPPQHMAGGGQSSPPPPPLPLPPHQQPILQDHLPHN
LMNGIHLPGDAAYGWTSGGGGGGRAAPY

Transcript Sequence

Transcript ID

Os06t0136900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1962306:1963580:-1 gene:Os06g0136900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEPRESSED PALEA 1 description:Protein of unknown function DUF296 domain containing protein. (Os06t0136900-01)
Sequence

AAACCAAACCCCTCGCCTCCGCTTTGACCACCGCCGCGCCGCGCCACGCCGCGCCACCGT
GAGAGAGGGAGACAGATGGATCCGGTGACGGCGGCGGCGGCGCATGGGGGTGGGCACCAC
CACCACCACCACTTCGGAGCGCCACCGGTGGCGGCGTTCCACCACCACCCGTTCCACCAC
GGCGGCGGGGCGCACTACCCGGCGGCGTTCCAGCAGTTTCAGGAGGAGCAGCAGCAGCTT
GTGGCGGCGGCGGCGGCGGCTGGTGGGATGGCGAAGCAGGAGCTGGTGGATGAGAGCAAC
AACACCATCAACAGCGGCGGGAGCAACGGGAGCGGCGGGGAGGAGCAGAGGCAGCAGTCC
GGGGAGGAGCAGCACCAGCAAGGGGCGGCGGCGCCGGTGGTGATCCGGCGTCCCAGGGGC
CGCCCCGCCGGCTCCAAGAACAAGCCCAAGCCTCCGGTCATCATCACGCGCGACAGCGCC
AGCGCGCTGCGGGCGCACGTCCTCGAGGTCGCCTCCGGGTGCGACCTCGTCGACAGCGTC
GCCACGTTCGCGCGCCGCCGCCAGGTCGGTGTCTGCGTGCTCAGCGCCACCGGCGCCGTC
ACCAACGTCTCCGTCCGGCAGCCCGGCGCGGGCCCCGGCGCCGTCGTCAACCTCACCGGC
CGCTTCGACATCCTCTCGCTGTCCGGCTCCTTCCTCCCGCCGCCGGCGCCTCCCTCCGCC
ACCGGCCTCACCGTCTACGTCTCCGGCGGCCAGGGGCAGGTCGTGGGCGGCACGGTCGCC
GGACCGCTCATCGCCGTCGGCCCCGTCGTCATCATGGCCGCCTCGTTCGGGAACGCCGCC
TACGAGCGCCTCCCGCTCGAGGACGACGAGCCGCCGCAGCACATGGCGGGCGGCGGCCAG
TCCTCGCCGCCGCCGCCGCCGCTGCCATTACCACCACACCAGCAGCCGATTCTTCAAGAC
CATCTGCCACACAACCTGATGAACGGAATCCACCTCCCCGGCGACGCCGCCTACGGCTGG
ACCAGCGGCGGCGGCGGCGGCGGCCGCGCGGCGCCGTACTGATCAACATCGATCTCGCCG
GAGAGAAAAAAAATGGAGGAGAAGGATCGGAGCGAGCCGTGCATGGTGTAGGATGAATTA
AGCTAAGAGTTAATTTCTTCTTCCGCCTTTGCTAATCATGATGCTCTCGTGTTGTTTAAT
CTGTGGCAATCTGCTTAATTGCAAGCTCATCACTGCAATTAAGCAGCAGCTAAGGATGGT
TGGATGGTTAAAACT