Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0136800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1949464:1953284:1 gene:Os06g0136800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Clp protease 9, CLP PROTEASE 9 description:Peptidase S14, ClpP family protein. (Os06t0136800-01)
Sequence

ATGGCGCTGTCCGCGGCGGCGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCC
GCCAGCGCGCCCTCATCTCTCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAG
ACCAAGCTAGGCTCGTCGGAGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCC
GTCAACCGGAGGATCTCTCTGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCA
ATGATGCCTGTTGGTACACCACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAA
TGGCTTGATATATGGAATGCTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATA
GATGAAGAGTTTAGTAACCAAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAAC
ACTAAAAAGATTCTTCTATACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCA
TTATATGATACAATGCTAAGCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCA
TTCAACTTGGCAGGATTTATTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCT
CTTTGCCGGATTTCACTTCAGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATA
GAAAATGAAGCAAATGAACTTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAG
CACACAGGTCATCCTGTTGATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGAT
GCTGAAGGAGCTTTGGAATATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAG
AAAGAGGGATCCACTGCTCAAAAGAAGGATCTACGTAATCTGGGACTTGGCTAG

Peptide Sequence

PEP ID

Os06t0136800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1949464:1953284:1 gene:Os06g0136800 transcript:Os06t0136800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Clp protease 9, CLP PROTEASE 9 description:Peptidase S14, ClpP family protein. (Os06t0136800-01)
Sequence

MALSAAAPANSSCFHPRAAAASAPSSLSVGTKVFVGLKAQTKLGSSESSCPNVTAGFYTA
VNRRISLGLSNKRATRARISMMPVGTPRVPYRTPGEGTWQWLDIWNALYRERIIFIGDSI
DEEFSNQVLASMLYLDSVDNTKKILLYINGPGGDLTPCMALYDTMLSLKSPIGTHCLGFA
FNLAGFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIENEANELIRIKNYLYSKLSE
HTGHPVDKIHEDLSRVKRFDAEGALEYGIIDRIIRPSRIKKEGSTAQKKDLRNLGLG

Transcript Sequence

Transcript ID

Os06t0136800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1949464:1953284:1 gene:Os06g0136800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Clp protease 9, CLP PROTEASE 9 description:Peptidase S14, ClpP family protein. (Os06t0136800-01)
Sequence

AGTCACTCCCCGCGAGCTAAGCTCTCCTCCCCATCACTCCGATGGCGCTGTCCGCGGCGG
CGCCGGCGAACTCCTCCTGCTTCCACCCGCGCGCCGCCGCCGCCAGCGCGCCCTCATCTC
TCAGCGTGGGCACCAAGGTCTTCGTCGGGTTGAAGGCCCAGACCAAGCTAGGCTCGTCGG
AGTCGTCGTGCCCGAATGTCACCGCCGGGTTCTACACCGCCGTCAACCGGAGGATCTCTC
TGGGATTATCAAACAAGAGGGCTACCAGGGCGCGCATTTCAATGATGCCTGTTGGTACAC
CACGGGTGCCTTACAGAACACCTGGTGAAGGAACTTGGCAATGGCTTGATATATGGAATG
CTCTATATCGCGAACGAATTATCTTCATTGGGGACAGTATAGATGAAGAGTTTAGTAACC
AAGTATTGGCGAGCATGTTGTATCTTGACAGCGTTGATAACACTAAAAAGATTCTTCTAT
ACATTAATGGTCCAGGAGGAGATCTTACACCATGCATGGCATTATATGATACAATGCTAA
GCCTAAAAAGTCCTATTGGTACTCATTGCCTGGGCTTTGCATTCAACTTGGCAGGATTTA
TTCTTGCAGCTGGTGAAAAGGGTTCACGTACGGGTATGCCTCTTTGCCGGATTTCACTTC
AGTCACCTGCTGGAGCAGCTCGAGGGCAGGCTGATGATATAGAAAATGAAGCAAATGAAC
TTATTAGGATCAAGAACTATCTTTACAGCAAGTTGTCAGAGCACACAGGTCATCCTGTTG
ATAAGATTCATGAAGATCTATCTAGGGTGAAGCGCTTCGATGCTGAAGGAGCTTTGGAAT
ATGGGATTATTGACCGTATTATTAGGCCTTCTCGCATCAAGAAAGAGGGATCCACTGCTC
AAAAGAAGGATCTACGTAATCTGGGACTTGGCTAGTAGATGCTATTGTATCAGTTATACG
TGTTAGATTGTATTGTTCTCCCCTCATTACTCCTGCTTTGAAATCCTACTGCTTTATTTC
ATCAACAGGAGTTCATGTGGAGATATGAGATTTGTTTTGCTGTCTCCATTGGTATTGGAC
TTAAAAGAGAGAATAATGTTGTAGCAGTCATAAGAGAAATACGGTACTCTAGTTGCCATT
CTGGTGATCTCATTTTGTCAAACATATCGAGAGACGCGTCATACATTTTGTGATATCAGG
CGAGAATGTTCTTGTTAAATAATGTGTTCGTTGCCTG