Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0134050-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1822809:1826383:-1 gene:Os06g0134050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2'-phosphotransferase. (Os06t0134050-01)
Sequence

ATGAAGGCCGCCGCCTCCCCGCTCCGCGCCGCCCTCCTCCTCTTCCTCTCCTCCTCGCCG
TCCCCGCGTCTCGCGCTCCCCATGAACCCCTCCTCCTCCTCCTCCTCCCGCGGCGCCGCC
TCCTACCACTCCAAGGCCGCCGCCTTCGCCTCCCCGCAGCCTCGCGGCGGCGGCGGCGGC
CGAGGGGGGCGACGCGGCGGCGGAAGAGGCCGCGGCGGCGATGGGAGCGACCGCATCGAC
GCCCTCGGCCGCCTCCTGACGCGGATCTTGCGGCACATGGCGTCGGAGCTGAACCTGGAG
ATGAGGACCGACGGCTACGTGCGGGTCCGCGACCTGCTCAAGCTCAACCTGCAGACCTTC
GCCAAGATCCCTCTCAAGTCCCACACCGTCGACGAAATCAAGGAGGCGGTTAGACGGGAT
AACAAGCAGAGGTTTGGTCTGTTGGAGGAAGATGGTGAGCTGCTGATTCGAGCTAACCAG
GGCCACACAGTAACGACTGTTACTTCAGAGAGCTTGTTGAAACCCATTCTATCAGCAGAT
GAAGTCTCTGTTTGTGTGCATGGAACATACAGGAAGAACCTCGATTCAATCTTGCATCAG
GGGCTAAAACGAATGGCAAGGTTACATGTACATTTCTCAAGTGGCTTACCGACAGATGGG
GGAGTTATTAGCGGTATGCGGCAGAGTGTTAACATCTTGATATATTTGGATGTCAGTATG
GCACTGCAAGATGGAATGAAGCTGTACATTTCAGACAACAAGGTGATTCTGACAGAGGGT
TTCGATGGCGTTGTTCCTGTGAAGTACTTCGAGAAAATTGAAACATGGCCAGGGAGAGCA
CCGATACCATTTGAAAAATAG

Peptide Sequence

PEP ID

Os06t0134050-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1822809:1826383:-1 gene:Os06g0134050 transcript:Os06t0134050-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2'-phosphotransferase. (Os06t0134050-01)
Sequence

MKAAASPLRAALLLFLSSSPSPRLALPMNPSSSSSSRGAASYHSKAAAFASPQPRGGGGG
RGGRRGGGRGRGGDGSDRIDALGRLLTRILRHMASELNLEMRTDGYVRVRDLLKLNLQTF
AKIPLKSHTVDEIKEAVRRDNKQRFGLLEEDGELLIRANQGHTVTTVTSESLLKPILSAD
EVSVCVHGTYRKNLDSILHQGLKRMARLHVHFSSGLPTDGGVISGMRQSVNILIYLDVSM
ALQDGMKLYISDNKVILTEGFDGVVPVKYFEKIETWPGRAPIPFEK

Transcript Sequence

Transcript ID

Os06t0134050-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1822809:1826383:-1 gene:Os06g0134050 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to EMB1067 (EMBRYO DEFECTIVE 1067); tRNA 2'-phosphotransferase. (Os06t0134050-01)
Sequence

GTCGTCCACCTCCGACCGACGGCTATGAAGGCCGCCGCCTCCCCGCTCCGCGCCGCCCTC
CTCCTCTTCCTCTCCTCCTCGCCGTCCCCGCGTCTCGCGCTCCCCATGAACCCCTCCTCC
TCCTCCTCCTCCCGCGGCGCCGCCTCCTACCACTCCAAGGCCGCCGCCTTCGCCTCCCCG
CAGCCTCGCGGCGGCGGCGGCGGCCGAGGGGGGCGACGCGGCGGCGGAAGAGGCCGCGGC
GGCGATGGGAGCGACCGCATCGACGCCCTCGGCCGCCTCCTGACGCGGATCTTGCGGCAC
ATGGCGTCGGAGCTGAACCTGGAGATGAGGACCGACGGCTACGTGCGGGTCCGCGACCTG
CTCAAGCTCAACCTGCAGACCTTCGCCAAGATCCCTCTCAAGTCCCACACCGTCGACGAA
ATCAAGGAGGCGGTTAGACGGGATAACAAGCAGAGGTTTGGTCTGTTGGAGGAAGATGGT
GAGCTGCTGATTCGAGCTAACCAGGGCCACACAGTAACGACTGTTACTTCAGAGAGCTTG
TTGAAACCCATTCTATCAGCAGATGAAGTCTCTGTTTGTGTGCATGGAACATACAGGAAG
AACCTCGATTCAATCTTGCATCAGGGGCTAAAACGAATGGCAAGGTTACATGTACATTTC
TCAAGTGGCTTACCGACAGATGGGGGAGTTATTAGCGGTATGCGGCAGAGTGTTAACATC
TTGATATATTTGGATGTCAGTATGGCACTGCAAGATGGAATGAAGCTGTACATTTCAGAC
AACAAGGTGATTCTGACAGAGGGTTTCGATGGCGTTGTTCCTGTGAAGTACTTCGAGAAA
ATTGAAACATGGCCAGGGAGAGCACCGATACCATTTGAAAAATAGAGAACACTGTTGTAA
TTTTGCTCATGCGTATAGCGATCTACTTCTTCAGTTCATGGGAATTGTGCCCTGAAAGGC
CGAAAGAAATGTAATTTTGCAAACAAGTTTAGGTTATGCTCGTTTGAGAAATGGAGAGGT
AGACATTGTTGTGAAGCTTCAGTAAGCTGTTCTTAATGTTGATTGGGTCAATGGCTCCTC
CAGTTTATCCAATTCCATCTTTGCAGTTACTACTAATCTTGTAACTGAGTATATTGCAAT
ACACAATTGGCTACGACTGACGATTTATGT