Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0130800-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1642665:1643799:-1 gene:Os06g0130800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Winged helix repressor DNA-binding domain containing protein. (Os06t0130800-01)
Sequence

ATGGCGACTGCGACCGAGGAGGTTGCCGCTGCGGCTGCTGCCGCCGGCGAGGCGCCGCCG
CCGCCGCCGCCAGCGGTGGTAGAGGAGGCGAAGGAGGCTTTGGAGGCACCGAAGCCGGAG
GAGGCGCCGAAGGCTGAGGAGGGGGAGGAGAAGAAGGCGGAGGGTGAGAAGGAGAAGGAG
AAGGCGAAGAAGGAGAGGAAACCGAGGGCGAGGAAGCCCCGATCGGCGGGGCCACACCAC
CCGCCCTACTTCGAGATGATCAAGGAGGCGATCATGGCGCTGGACGGGAACGGCAAGGCG
GGATCGAGCCCGTACGCGATCGCCAAGTACATGGGGGAGCAGCACATGGGGGTTCTCCCG
GCGAACTACCGGAAGGTGCTCGCCGTGCAGCTGCGGAACTTCGCCGCCAAGGGCCGGCTC
GTGAAGGTGAAGGCCTCGTTCAAGCTGTCGGCTGCCGAGGAGAAGAAGGCGACGGCGGCG
AAGGCGGCCAGGTCCAAGGCGGCCAAGGGCGTCGTCGGCGGCGCCAAGAGGAAGAGGACC
CCGCGCCCCTCCGCCGCCGCCGCCAAGAAGCCCGCGTCGTCGGCGGAGGCGAAGAAGGCG
GTTCCCCCCGCCCGCCCAGCCCGCGCCAAGAGGGCGAGGAAGGCCGCCCCCGCGAAGCCG
ATGCAGCCGCCCAAATCCATCCGCTCCGCCATCTCCAAGAAGGCCAACAAGGCCAGCGCC
TGA

Peptide Sequence

PEP ID

Os06t0130800-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1642665:1643799:-1 gene:Os06g0130800 transcript:Os06t0130800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Winged helix repressor DNA-binding domain containing protein. (Os06t0130800-01)
Sequence

MATATEEVAAAAAAAGEAPPPPPPAVVEEAKEALEAPKPEEAPKAEEGEEKKAEGEKEKE
KAKKERKPRARKPRSAGPHHPPYFEMIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLP
ANYRKVLAVQLRNFAAKGRLVKVKASFKLSAAEEKKATAAKAARSKAAKGVVGGAKRKRT
PRPSAAAAKKPASSAEAKKAVPPARPARAKRARKAAPAKPMQPPKSIRSAISKKANKASA

Transcript Sequence

Transcript ID

Os06t0130800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1642665:1643799:-1 gene:Os06g0130800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Winged helix repressor DNA-binding domain containing protein. (Os06t0130800-01)
Sequence

GTCACGCACACAGCAGTTGAGCTCTTTTTCCACTACGCACTAGTAGTAGCACTCTGGTAT
TCTCCCATGGCGACTGCGACCGAGGAGGTTGCCGCTGCGGCTGCTGCCGCCGGCGAGGCG
CCGCCGCCGCCGCCGCCAGCGGTGGTAGAGGAGGCGAAGGAGGCTTTGGAGGCACCGAAG
CCGGAGGAGGCGCCGAAGGCTGAGGAGGGGGAGGAGAAGAAGGCGGAGGGTGAGAAGGAG
AAGGAGAAGGCGAAGAAGGAGAGGAAACCGAGGGCGAGGAAGCCCCGATCGGCGGGGCCA
CACCACCCGCCCTACTTCGAGATGATCAAGGAGGCGATCATGGCGCTGGACGGGAACGGC
AAGGCGGGATCGAGCCCGTACGCGATCGCCAAGTACATGGGGGAGCAGCACATGGGGGTT
CTCCCGGCGAACTACCGGAAGGTGCTCGCCGTGCAGCTGCGGAACTTCGCCGCCAAGGGC
CGGCTCGTGAAGGTGAAGGCCTCGTTCAAGCTGTCGGCTGCCGAGGAGAAGAAGGCGACG
GCGGCGAAGGCGGCCAGGTCCAAGGCGGCCAAGGGCGTCGTCGGCGGCGCCAAGAGGAAG
AGGACCCCGCGCCCCTCCGCCGCCGCCGCCAAGAAGCCCGCGTCGTCGGCGGAGGCGAAG
AAGGCGGTTCCCCCCGCCCGCCCAGCCCGCGCCAAGAGGGCGAGGAAGGCCGCCCCCGCG
AAGCCGATGCAGCCGCCCAAATCCATCCGCTCCGCCATCTCCAAGAAGGCCAACAAGGCC
AGCGCCTGATCATCGCCGCCGTCTCGCCGCCCGTCGCCGCCGCGCGCTGTATCCCTGTAT
AGCCTAGGTGTTGTCGCTTACCTAGTAGTAGTTCGCCATCGTCGTCTCGTCTGCTTCGAT
CGATCGAGCGCTCTGTGTCCGGTGTGTGTGTTGCGTTGTAGATAAGGTTTGGGTTTCTTT
TTGCAAGGGAGGAAGAAGCTACTGTAGCATATCGCCAAGAAGCTGTAGTAATAAGATGAT
CTGGCGCTCGCAGCTTTGCCTTATGA