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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0130500-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1635098:1635912:1 gene:Os06g0130500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-1 description:Similar to Cyclophilin-like protein PPIL3b. (Os06t0130500-01)
Sequence

ATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAG
GCGCCGCGGACGGCGGAGAACTTCCTGGCGCTGTGCGCGAGCGGCTACTACGACGGCACC
ATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGG
AAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAG
CACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACACCAACGGGAGCCAG
TTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAG
GTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGAC
CGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAAC
TAA

Peptide Sequence

PEP ID

Os06t0130500-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1635098:1635912:1 gene:Os06g0130500 transcript:Os06t0130500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-1 description:Similar to Cyclophilin-like protein PPIL3b. (Os06t0130500-01)
Sequence

MSVTLHTNLGDIKCEVFCDQAPRTAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTG
KGGTSIWGKKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYTVFAK
VIHGFEVLDLMEKAQTGPGDRPLAEIRLNRVTIHANPLAN

Transcript Sequence

Transcript ID

Os06t0130500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1635098:1635912:1 gene:Os06g0130500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYCLOPHILIN 18-1 description:Similar to Cyclophilin-like protein PPIL3b. (Os06t0130500-01)
Sequence

GTCTTCCCCAAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACC
CGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAG
TGCGAGGTGTTCTGCGACCAGGCGCCGCGGACGGCGGAGAACTTCCTGGCGCTGTGCGCG
AGCGGCTACTACGACGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGC
GGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGAC
GAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGG
CCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGC
CACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAG
GCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATC
CACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAAT
TCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGC
AAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGAT
TGATGC