Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0127200-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:1438381:1445164:-1 gene:Os06g0127200 gene_biotype:protein_coding transcript_biotype:protein_coding description:SET domain containing protein. (Os06t0127200-01)
Sequence

ATGGCTGCCGCCGCCGCCGCAGCAGCAGTACCCGGCGACGCCAAGCTAGACTCCTTCCTC
CAATGGCTCCAGGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGC
GAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGGCCGGCGCCACCGACGAGGTGGTGATG
GTGGTGCCGCTCGATCTCGCCATCACTCCGATGCGGGTGCTGCAGGACCCGCTCGTCGGG
CCGCGGTGCCGCGCGCTCTTCGAGGAAGGTGGCGTCGACGACCGCCTCCTCGTCATGCTC
TTCCTCATGGTCGAGCGACTCCGCCCTAGCTCCCTCTGGAAGCCGTATTTGGATATGCTT
CCAAGCACCTTCGGAAGCTCCATTTGGTTCACCGAAGATGAGCTTGCTGAGTTGGAAGGG
ACCACACTTCACCGGGCAACCGTGATGCAGAGGAAGTCATTGCAAACCTTATTCGATAAT
AAGGTTAAAGGTCTGGTTGGGGAGCTCTTAAACGTCGATGAATCAGGAAGCTCAATTGAA
GTGCGGTTCGAAGACTTCCTTTGGGCAAACTCAATATTCTGGACTCGAGCATTGAATATA
CCATTGCCTCGTTTTTATGTTTTTCCGGAATCACTAGACGAAAAGCGGGCCAACATTGGT
GATGATTGTGGTGATTCTAGTCTCAGTGCCCCTCAGGGAACTGGGACTGCCATTACAGCT
AAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAG
GGCCTTGTCCCTGGAATCGACTTTTGTAATCATAATGTAAAGGCGCTGGCAACATGGGAA
GTTGATTCCATGGGACATGTTACTGGATGTCCTTCTTCAATGTACCTTGTACTAGCTGAT
AAAAGCTTTGTGAAGGCTGAAACAGAGATCTGCATAAATTATGGCAACAAAGGAAATGAG
GAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATGATT
CATTATCCAGTAGAAGCTCTTCGACAGGTTCAATCTGCTGATATTAAGATGAAGCTACTG
GAGATACAGAATGCCGAATTGCGATGTCTTTTACCTCGTAGTTTGCTTGAAAATGGATTT
TTTGGTAGCTGTTCTGGTGAAAACAAGGAGAACAAAAATAATACAAGTCCTTTTTCTAGT
TATAGCTGGAGTGGTCAACGCAAGGTTCCATCATATATCGAGAAAATTGTTTTCTCTCAG
GAATTTATAAGTACCCTGCGTACAATTGCTCTGCAAGAACATGAGCTTGAGCATACCGCT
TCATTGCTTGGAGAGATTGGATCTAATGAAGATAGAGATGATGAGCTCCGGAGTGCTATA
TGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAA
ATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAA
TTCGATCTCAGTGATTCAGAAGACGCAACGAGAAGTGACGAGAGCAACGAGACCAAGTCA
AAAGTAAATATTAGGACGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTG
TTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGTCGTCAAAAGAAGAGAACTAA

Peptide Sequence

PEP ID

Os06t0127200-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:1438381:1445164:-1 gene:Os06g0127200 transcript:Os06t0127200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:SET domain containing protein. (Os06t0127200-01)
Sequence

MAAAAAAAAVPGDAKLDSFLQWLQANGADLRGCTIRRCGREGYGVFSTAAEAGATDEVVM
VVPLDLAITPMRVLQDPLVGPRCRALFEEGGVDDRLLVMLFLMVERLRPSSLWKPYLDML
PSTFGSSIWFTEDELAELEGTTLHRATVMQRKSLQTLFDNKVKGLVGELLNVDESGSSIE
VRFEDFLWANSIFWTRALNIPLPRFYVFPESLDEKRANIGDDCGDSSLSAPQGTGTAITA
KNISGNDNPKSSNTESIWVEGLVPGIDFCNHNVKALATWEVDSMGHVTGCPSSMYLVLAD
KSFVKAETEICINYGNKGNEELLYLYGFVIDNNPDDYLMIHYPVEALRQVQSADIKMKLL
EIQNAELRCLLPRSLLENGFFGSCSGENKENKNNTSPFSSYSWSGQRKVPSYIEKIVFSQ
EFISTLRTIALQEHELEHTASLLGEIGSNEDRDDELRSAIWEVSGDNGALSLLVDLLRVK
MTELEEGTGTEASDSQLLEKFDLSDSEDATRSDESNETKSKVNIRTCIVYRRGQKQLTKL
FLREAEHLLELSSKEEN

Transcript Sequence

Transcript ID

Os06t0127200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1438381:1445164:-1 gene:Os06g0127200 gene_biotype:protein_coding transcript_biotype:protein_coding description:SET domain containing protein. (Os06t0127200-01)
Sequence

ACTTCGCCCGCGCCGGCGCCGCCCGTCGAACACCATGGCTGCCGCCGCCGCCGCAGCAGC
AGTACCCGGCGACGCCAAGCTAGACTCCTTCCTCCAATGGCTCCAGGCCAACGGCGCCGA
CCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGC
CGCCGAGGCCGGCGCCACCGACGAGGTGGTGATGGTGGTGCCGCTCGATCTCGCCATCAC
TCCGATGCGGGTGCTGCAGGACCCGCTCGTCGGGCCGCGGTGCCGCGCGCTCTTCGAGGA
AGGTGGCGTCGACGACCGCCTCCTCGTCATGCTCTTCCTCATGGTCGAGCGACTCCGCCC
TAGCTCCCTCTGGAAGCCGTATTTGGATATGCTTCCAAGCACCTTCGGAAGCTCCATTTG
GTTCACCGAAGATGAGCTTGCTGAGTTGGAAGGGACCACACTTCACCGGGCAACCGTGAT
GCAGAGGAAGTCATTGCAAACCTTATTCGATAATAAGGTTAAAGGTCTGGTTGGGGAGCT
CTTAAACGTCGATGAATCAGGAAGCTCAATTGAAGTGCGGTTCGAAGACTTCCTTTGGGC
AAACTCAATATTCTGGACTCGAGCATTGAATATACCATTGCCTCGTTTTTATGTTTTTCC
GGAATCACTAGACGAAAAGCGGGCCAACATTGGTGATGATTGTGGTGATTCTAGTCTCAG
TGCCCCTCAGGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCC
TAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAATCGACTTTTG
TAATCATAATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGG
ATGTCCTTCTTCAATGTACCTTGTACTAGCTGATAAAAGCTTTGTGAAGGCTGAAACAGA
GATCTGCATAAATTATGGCAACAAAGGAAATGAGGAACTACTATACCTCTATGGATTTGT
AATTGACAACAATCCTGACGATTATCTCATGATTCATTATCCAGTAGAAGCTCTTCGACA
GGTTCAATCTGCTGATATTAAGATGAAGCTACTGGAGATACAGAATGCCGAATTGCGATG
TCTTTTACCTCGTAGTTTGCTTGAAAATGGATTTTTTGGTAGCTGTTCTGGTGAAAACAA
GGAGAACAAAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGT
TCCATCATATATCGAGAAAATTGTTTTCTCTCAGGAATTTATAAGTACCCTGCGTACAAT
TGCTCTGCAAGAACATGAGCTTGAGCATACCGCTTCATTGCTTGGAGAGATTGGATCTAA
TGAAGATAGAGATGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGC
ACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGG
AACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGC
AACGAGAAGTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGACGTGCATAGT
GTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCT
GGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTG
CGCATTTCCCTTTCATGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTA
CCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAA
AGAAAAGGCGTGTGTTACTGTAGCCATTATTTCTTGGTTTTCAGAAGCTAATTCAATTAA
GAAACAGAAAATTGCTACTACTAATAAAATGCTTCATGTCTTCTGATGAACTAATTCAGA
ATGTATGGCTGTACATTGAAGTACAAAGCATAGACTTTC