Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0125300-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:1363240:1364866:1 gene:Os06g0125300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0125300-01);Hypothetical conserved gene. (Os06t0125300-02)
Sequence

CAGCCATGGCCGCGCCGCCTCACCGCGCGCAGCCTCGCGCGCCTCCTGCTCCGCCTCCCG
ACGCCGCACCTCGCCGTGCTCGCCTTCCGCCACGCGCTCTTCCACGCCGCCCCGCCGCTT
CCCCCCTCGCTCCCCGTCTTCGCCGCCGTCCTCTCCCGCCTCCCCGCCGCCGACCCCGCC
CTCCTCCCCCCCGTCCTCTCCGCCCTCCGCGCCGCCAACCTCCCCGCCTTCTCCGACCGC
CCCTTCCTTCCCCTGCTCCGCTCGCTCCCGCCCCTCCCTTCCCTCCGCCTCTTCCTCTCC
CTCCCCTCCTTCAACTCCCACCCCTCCGTCCGCTCCTTCAACGCCCTCCTCCACTCTCTC
GTCTCCGCCCGCCGCCTCCGTCTCGCCGCCGCGCTCTTCCGCGCCGCGCCCACCAAGCTC
TACATCACACCCAACCTCGTCTCCTGCAACATCCTGCTCAAGGGGCTTGTTGGCATCGGT
GACCTCGATGCCGCACTCAAGGTACTCGACGAAATGCCTGGCCTGGGAATCACCCCGGAT
GTCGTCACCTACACCACGGTTCTCTCTGCCTACTGTGGGAAGGGGGATATTGAAGGTGCT
CAGAAGCTCTTCGATGATATAATCGCTAGTGGACGTAGACCAGATGTTACGATGTACACC
GTGCTCATCGACGGTTACTGCCAGTGCGGGAACCTCCAGGATGCAGCCAGAATTATGGAT
GAGATGGAGGCTGCTAGAGTGCAACCAAATGAGGTCACATATTCCGTGGTGATAGAAGCA
TGCTGCAAGGAGGAAAAACCTATTGAGGCACGCGATTTTATGCGAGAGATGCTGGGGGCA
GGATATGTGCCAGACACAGCGCTAGGTGCTAAGGTGGTTGATGTGCTATGCCAGGATGGA
AAATCAGAGGAGGCGTATCAATTGTGGAGATGGATGGAGAAGAAGAACGTGCCACCTGAT
AACATGGTCACAAGCACATTGATCTATTGGTTGTGCAAGAATGGAATGGTCCGAGAGGCG
AGGAACCTGTTTGATGAGCTTGAGAGGGGTTTCAAACCAAGCTTGCTGACGTACAACTCA
CTTATTTCAGGATTATGTGAAAATGAAGAGCTACAGGAGGCTGGGCGGGTGTGGGATGAC
ATGGTTGAACGAGGGTATGAACCAAATGCCATGACTTATGAGGCCTTGATCAAGGGATTA
TGCAAAACAGGGAAGCCAAATGAAGGGGCTACAGTCTTTGAGGAAATGGTGTCTAGAGGT
TGCAAGCCAAGCAGCCTTCTTTTCCAAGTTTTGGTTGATAGTCTTTCGGAGCCAAGACAT
GAGGATACCATTAGAAAAATTCTTGAAACTGCAGCTTTATATGGTCGGTATTTCCTGGAT
GGTGATTCTTGGGAAATTTTTGTCAGGAAGGTGGTAAATGCAACTGATACTTCGAACAAG
CATCTCGATTTAGTATTAGATATGTGA

Peptide Sequence

PEP ID

Os06t0125300-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:1363240:1364866:1 gene:Os06g0125300 transcript:Os06t0125300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0125300-01);Hypothetical conserved gene. (Os06t0125300-02)
Sequence

QPWPRRLTARSLARLLLRLPTPHLAVLAFRHALFHAAPPLPPSLPVFAAVLSRLPAADPA
LLPPVLSALRAANLPAFSDRPFLPLLRSLPPLPSLRLFLSLPSFNSHPSVRSFNALLHSL
VSARRLRLAAALFRAAPTKLYITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPD
VVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMD
EMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDG
KSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDELERGFKPSLLTYNS
LISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRG
CKPSSLLFQVLVDSLSEPRHEDTIRKILETAALYGRYFLDGDSWEIFVRKVVNATDTSNK
HLDLVLDM

Transcript Sequence

Transcript ID

Os06t0125300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:1363240:1364866:1 gene:Os06g0125300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os06t0125300-01);Hypothetical conserved gene. (Os06t0125300-02)
Sequence

CCAGCCATGGCCGCGCCGCCTCACCGCGCGCAGCCTCGCGCGCCTCCTGCTCCGCCTCCC
GACGCCGCACCTCGCCGTGCTCGCCTTCCGCCACGCGCTCTTCCACGCCGCCCCGCCGCT
TCCCCCCTCGCTCCCCGTCTTCGCCGCCGTCCTCTCCCGCCTCCCCGCCGCCGACCCCGC
CCTCCTCCCCCCCGTCCTCTCCGCCCTCCGCGCCGCCAACCTCCCCGCCTTCTCCGACCG
CCCCTTCCTTCCCCTGCTCCGCTCGCTCCCGCCCCTCCCTTCCCTCCGCCTCTTCCTCTC
CCTCCCCTCCTTCAACTCCCACCCCTCCGTCCGCTCCTTCAACGCCCTCCTCCACTCTCT
CGTCTCCGCCCGCCGCCTCCGTCTCGCCGCCGCGCTCTTCCGCGCCGCGCCCACCAAGCT
CTACATCACACCCAACCTCGTCTCCTGCAACATCCTGCTCAAGGGGCTTGTTGGCATCGG
TGACCTCGATGCCGCACTCAAGGTACTCGACGAAATGCCTGGCCTGGGAATCACCCCGGA
TGTCGTCACCTACACCACGGTTCTCTCTGCCTACTGTGGGAAGGGGGATATTGAAGGTGC
TCAGAAGCTCTTCGATGATATAATCGCTAGTGGACGTAGACCAGATGTTACGATGTACAC
CGTGCTCATCGACGGTTACTGCCAGTGCGGGAACCTCCAGGATGCAGCCAGAATTATGGA
TGAGATGGAGGCTGCTAGAGTGCAACCAAATGAGGTCACATATTCCGTGGTGATAGAAGC
ATGCTGCAAGGAGGAAAAACCTATTGAGGCACGCGATTTTATGCGAGAGATGCTGGGGGC
AGGATATGTGCCAGACACAGCGCTAGGTGCTAAGGTGGTTGATGTGCTATGCCAGGATGG
AAAATCAGAGGAGGCGTATCAATTGTGGAGATGGATGGAGAAGAAGAACGTGCCACCTGA
TAACATGGTCACAAGCACATTGATCTATTGGTTGTGCAAGAATGGAATGGTCCGAGAGGC
GAGGAACCTGTTTGATGAGCTTGAGAGGGGTTTCAAACCAAGCTTGCTGACGTACAACTC
ACTTATTTCAGGATTATGTGAAAATGAAGAGCTACAGGAGGCTGGGCGGGTGTGGGATGA
CATGGTTGAACGAGGGTATGAACCAAATGCCATGACTTATGAGGCCTTGATCAAGGGATT
ATGCAAAACAGGGAAGCCAAATGAAGGGGCTACAGTCTTTGAGGAAATGGTGTCTAGAGG
TTGCAAGCCAAGCAGCCTTCTTTTCCAAGTTTTGGTTGATAGTCTTTCGGAGCCAAGACA
TGAGGATACCATTAGAAAAATTCTTGAAACTGCAGCTTTATATGGTCGGTATTTCCTGGA
TGGTGATTCTTGGGAAATTTTTGTCAGGAAGGTGGTAAATGCAACTGATACTTCGAACAA
GCATCTCGATTTAGTATTAGATATGTGATCATGTGGTGCTGAGAAATGTAATCATCAAAT
TCAATAGCAGTGTCCTTCTACAGAGATATCAGGATATTGTGGTTCTCTGGGCTTGCTATT
CCTGGGATGTGCAGATTGGTATAGGGATACACTGGATAAATCAAAGAATGTGAGCTATAT
TGACACC