Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0116400-02
CDS Infomation

cds chromosome:IRGSP-1.0:6:908856:910292:-1 gene:Os06g0116400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZEBRA-NECROSIS description:Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-01);Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-02)
Sequence

ATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCGCGCCGCC
TTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGGCGGTGCG
GCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCACCACCAC
CACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGGCGAGGCT
GTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTCGGCTGCG
GCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGCGCCGCCG
GCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTCGGAGCTG
CTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGGGCCGGAC
CACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGCCGCCGTG
GGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCTGTTCCTC
AGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGTCGTCGGC
CTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCCCACGCCG
TGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCTCGATGCT
CTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGTGCACGGG
CTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCGCGTCGCC
GGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAGCTACACC
GTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCACGGAGAAG
CTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCATCAGCCAG
TCTCTCGGCTTTAGCTTGTACTGA

Peptide Sequence

PEP ID

Os06t0116400-02
PEP Infomation

pep chromosome:IRGSP-1.0:6:908856:910292:-1 gene:Os06g0116400 transcript:Os06t0116400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZEBRA-NECROSIS description:Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-01);Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-02)
Sequence

MAMERLISSPLLPRRPPRAAFSRPPPSLAAAPPHHRAGGAASGYGSRPPLASLLLSRHHH
HHQPPVLAANPAADVAAGEAVPPATATASRRFLQKVASAAAATLLATIALTLIQPAWAPP
ALASFHSAAKAGGGIFKSELLSSAWTGFLAGCLHTLSGPDHLAALAPLSIGRSRVESAAV
GALWGCGHDAGQVIFGLLFLSLKDRLHIEVIRTWGTRVVGLTLLVIGALGIREATEVPTP
CVALENGGGGGGAHRGPLDALPATRKKITFATFATGIVHGLQPDALMMVLPALALPSRVA
GAAFLGMFLVGTVVAMGSYTVLIGSCTEALKERVPRITEKLTWAASLVAISMGLGILISQ
SLGFSLY

Transcript Sequence

Transcript ID

Os06t0116400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:908856:910292:-1 gene:Os06g0116400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZEBRA-NECROSIS description:Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-01);Nickel/cobalt transporter, high-affinity domain containing protein. (Os06t0116400-02)
Sequence

AGCAGCGATGGCAATGGAGAGGCTTATCTCTTCGCCGCTCCTCCCGCGCCGGCCTCCCCG
CGCCGCCTTCTCCCGCCCGCCGCCCTCCCTCGCCGCCGCGCCACCCCACCACCGCGCCGG
CGGTGCGGCCTCCGGGTACGGCTCCAGGCCGCCTCTCGCCTCGCTCCTCCTCTCCAGGCA
CCACCACCACCACCAGCCTCCGGTCCTCGCGGCCAATCCTGCTGCCGATGTGGCCGCCGG
CGAGGCTGTCCCTCCCGCCACCGCCACCGCCAGCCGGCGCTTCCTCCAGAAGGTGGCGTC
GGCTGCGGCTGCCACTCTGTTGGCGACGATTGCACTGACGCTGATCCAGCCGGCGTGGGC
GCCGCCGGCGTTGGCGTCGTTCCACTCGGCGGCGAAGGCGGGAGGTGGCATCTTCAAGTC
GGAGCTGCTCAGCAGCGCGTGGACGGGGTTCCTGGCCGGCTGCCTGCACACGCTCTCCGG
GCCGGACCACCTCGCCGCGCTGGCGCCGCTGTCCATCGGGAGGTCGCGGGTGGAGAGCGC
CGCCGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATCTTCGGCCTCCT
GTTCCTCAGCCTCAAGGACCGCCTCCACATCGAGGTCATCCGAACGTGGGGGACCCGCGT
CGTCGGCCTCACGCTGCTCGTCATCGGCGCCCTCGGCATCAGGGAGGCCACCGAGGTGCC
CACGCCGTGCGTCGCGCTGGAGAACGGCGGCGGCGGCGGCGGCGCGCACCGTGGCCCGCT
CGATGCTCTACCAGCCACCAGGAAGAAGATCACCTTCGCCACGTTCGCCACCGGGATCGT
GCACGGGCTGCAGCCCGACGCGCTCATGATGGTCCTGCCGGCGCTCGCCCTCCCGTCGCG
CGTCGCCGGCGCGGCGTTCCTTGGCATGTTCCTCGTCGGCACCGTGGTCGCCATGGGCAG
CTACACCGTCCTGATCGGCTCTTGTACGGAGGCGCTCAAGGAGAGGGTTCCCAGGATCAC
GGAGAAGCTGACATGGGCTGCCTCGCTCGTGGCCATCTCCATGGGCCTCGGCATCCTCAT
CAGCCAGTCTCTCGGCTTTAGCTTGTACTGATCCGCCATCCCTCGCGACACCTCCTTCTT
CTTCTTCGCCATTGTTAAGCTTCCACTGCCTCCACTGTAGGAATCTGCCATGAGAATTTT
GCAAATGTTGCTTGTTGAGATCCAGGAGAATTCAAGTTTAGTTCACAAG