Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os06t0116300-01
CDS Infomation

cds chromosome:IRGSP-1.0:6:902675:907076:-1 gene:Os06g0116300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os06t0116300-01)
Sequence

ATGGCGACGCGGAACCGGACGCCTCTGTACCGCAAGTACCGCGACGCGCTGCGCCACGTC
CGCGCGCCGGCGGGGGCTCCGTCGTCGTCATCGTCCGGAGGAGGAGGAGGAGGAGGAGGC
GGGGGGCCGGTGATCGAGATGGCCTCGCTGCTGCGCTCCAACCGCCCCTACGCCCCCCTC
AGCACCGACGACCCCTCCGCCGCCTCCAGTAGAAGTGCTGTGACGGTCGGGCTGCCCCCG
GCATGGGTTGATGTTTCCGAAGAGATATCTGCCAACATGCAGCGGGCAAGAACGAAGATG
GCAGAGCTGGCTAAGGCACATGCCAAAGCCTTGATGCCATCCTTTGGTGATGGTAGAGAT
GACCAGCGAGCAATTGAGATTCTTACACATGAGGTAACAGACTTACTGAAGAGGTCGGAG
AAGAGACTTCAGAAGCTATCCATGAAAGATTCTTCAGAGGATTCAAATGTCCGAAAGAAT
GTCCAGCGTTCACTCGCTACAGACCTGCAAAGCCTTTCGATGGAGTTCCGTAAAAAACAG
TCAACTTATTTAAAGCAGCTACGCCAACAGAAAGAGGGGCAAGATGGAGTTGATTTGGAA
ATGAACATGAATGGTTCTAAGTCGACATTTGAACTTGGAGATGATGAATTTGAGGATGTG
GGTTTCACGGAGGTTCAGATGTCAAAACTTAAGAAAAGCGAAGCATTCACCAGAGAAAGA
GAAAGAGAAATCGAGCAGGTTGTCGAATCAGTTAACGAGCTTGCACAGATCATGAAGGAC
CTTTCAGTTCTTGTGATAGATCAGGGAACTATCATAGATCGGATAGACTACAATATACAG
AATGTTGCAGCTTCCGTTGAAGAGGGTTATAAACAATTGCAAAAGGCTGAGAGGACACAG
AAGAAAGGGGGCATGGTCATGTGTGCGACTACCCTTGTCATTCTTATCTTCATCATGATA
GTCCTCCTGATTTTAAAGAAGATCCTTTTCTGA

Peptide Sequence

PEP ID

Os06t0116300-01
PEP Infomation

pep chromosome:IRGSP-1.0:6:902675:907076:-1 gene:Os06g0116300 transcript:Os06t0116300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os06t0116300-01)
Sequence

MATRNRTPLYRKYRDALRHVRAPAGAPSSSSSGGGGGGGGGGPVIEMASLLRSNRPYAPL
STDDPSAASSRSAVTVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPSFGDGRD
DQRAIEILTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQRSLATDLQSLSMEFRKKQ
STYLKQLRQQKEGQDGVDLEMNMNGSKSTFELGDDEFEDVGFTEVQMSKLKKSEAFTRER
EREIEQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQ
KKGGMVMCATTLVILIFIMIVLLILKKILF

Transcript Sequence

Transcript ID

Os06t0116300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:6:902675:907076:-1 gene:Os06g0116300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os06t0116300-01)
Sequence

CCAACTCTCTCTCTCTCTCCCTTCTCTCTCCCCGATTCCTCCTCCGCCTCGCCGTCGAGA
TCTCGCCGCGCCCGCGCCCGCCTCCGCCGGAGCTCTCCCGCGCCATGGCGACGCGGAACC
GGACGCCTCTGTACCGCAAGTACCGCGACGCGCTGCGCCACGTCCGCGCGCCGGCGGGGG
CTCCGTCGTCGTCATCGTCCGGAGGAGGAGGAGGAGGAGGAGGCGGGGGGCCGGTGATCG
AGATGGCCTCGCTGCTGCGCTCCAACCGCCCCTACGCCCCCCTCAGCACCGACGACCCCT
CCGCCGCCTCCAGTAGAAGTGCTGTGACGGTCGGGCTGCCCCCGGCATGGGTTGATGTTT
CCGAAGAGATATCTGCCAACATGCAGCGGGCAAGAACGAAGATGGCAGAGCTGGCTAAGG
CACATGCCAAAGCCTTGATGCCATCCTTTGGTGATGGTAGAGATGACCAGCGAGCAATTG
AGATTCTTACACATGAGGTAACAGACTTACTGAAGAGGTCGGAGAAGAGACTTCAGAAGC
TATCCATGAAAGATTCTTCAGAGGATTCAAATGTCCGAAAGAATGTCCAGCGTTCACTCG
CTACAGACCTGCAAAGCCTTTCGATGGAGTTCCGTAAAAAACAGTCAACTTATTTAAAGC
AGCTACGCCAACAGAAAGAGGGGCAAGATGGAGTTGATTTGGAAATGAACATGAATGGTT
CTAAGTCGACATTTGAACTTGGAGATGATGAATTTGAGGATGTGGGTTTCACGGAGGTTC
AGATGTCAAAACTTAAGAAAAGCGAAGCATTCACCAGAGAAAGAGAAAGAGAAATCGAGC
AGGTTGTCGAATCAGTTAACGAGCTTGCACAGATCATGAAGGACCTTTCAGTTCTTGTGA
TAGATCAGGGAACTATCATAGATCGGATAGACTACAATATACAGAATGTTGCAGCTTCCG
TTGAAGAGGGTTATAAACAATTGCAAAAGGCTGAGAGGACACAGAAGAAAGGGGGCATGG
TCATGTGTGCGACTACCCTTGTCATTCTTATCTTCATCATGATAGTCCTCCTGATTTTAA
AGAAGATCCTTTTCTGACATAGATATATATATTCTTTATGGTTGATGGATGGCTTCCAAG
TGAACAACACTCGCTGAGTGATTATGCAGTGCCTGCGTACTGGAACAGCTGCAGTTCAGT
TGCATGTTTACAGTTTACTGATCTCAAAATTCAAAGACGGTTCAGCCCATATCCATAATT
GCTGGGCCTGCAACTCTCTTCAGTCTTCCACATTTTTTTGCAGCACTGCAAGTGTAGAGA
TATCATATTCATAGGAGGCTCTTTTTTTTTAAGAGTTGTGTTGACACAATTTGCCCTACC
TGTTTGTATTGGAGCAGCCAGGTTTGGTTTTGTATGCTCTGTACAAAGTTGTACTATCAT
CCAATTCTTGAAGAAAAAGTAGCTCCACTTTCGGTCT