Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os06t0114000-03
CDS Infomation	cds chromosome:IRGSP-1.0:6:811064:815114:-1 gene:Os06g0114000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 beta subunit 1 description:Hypothetical gene. (Os06t0114000-01);Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress protein) (GSP63). (Os06t0114000-02);Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment). (Os06t0114000-03);Similar to RuBisCo subunit binding-protein beta subunit (Fragment). (Os06t0114000-04)
Sequence	CTTGTTGGAGTTACACTGGGACCAAAGGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGG TCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGGTTGAACTGGAGGATCCT GTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCT GGAGATGGCACAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAACTGCGAAA GCACTAGTTGAAGAGCTAAAGAAATTGTCAAAGGAGGTTGAAGACAGTGAGCTTGCGGAT GTTGCTGCAGTCAGTGCTGGCAACAATTATGAAATCGGTAATATGATAGCAGAGGCTATG AGCAAGGTTGGCAGGAAGGGTGTGGTTACCCTTGAAGAAGGGAGAAGTTCTGAGAATAAT CTCTATGTTGTGGAGGGAATGCAGTTTGAACGTGGTTATATCTCCCCGTATTTTGTAACT GACAGCGAGAAAATGTCTGCAGAATATGAGAACTGCAAGCTTCTTTTGGTGGACAAAAAA ATCACCAACGCAAGGGATCTTATCAATGTTTTGGAGGAGGCCATAAGAGGTGCATACCCA ATTCTGATAATTGCTGAGGATATTGAGCAGGAGGCTCTTGCTACTCTTGTTGTCAACAAG CTTAGAGGGTCATTGAAAATTGCCGCTATCAAAGCCCCTGGTTTTGGTGAGCGCAAGACC CAGTACTTGGATGATATTGCCATTCTAACTGGAGCAACTGTAATCAGGGATGAAGTTGGG CTGTCACTTGACAAGGCAGACAAATCAGTTTTAGGAACGGCTGCAAAGGTGGTCCTTAAC AAAGAGTCAACAACAATTGTTGGTGATGGCAGTACACAGGAAGAAGTGACTAAGAGGGTT GCACAAATAAAAAATCTCATCGAGGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAAT GAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGGTGGGAGCACAAACAGAG ACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCTACCAAGGCTGCT GTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTT GACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGGTTGGAGCTGAAATTGTAAGG AGAGCGCTGAGCTACCCGCTTAAATTGATTGCTAAGAATGCTGGTGTTAATGGAAGCGTT GTTACCGAGAAGGTTCTCTCTAACGATAACTTCAAGTTTGGTTACAATGCTGCAACTGGA CAGTACGAGGATTTGATGGCTGCTGGTATCATTGACCCCACTAAGGTGGTGAGATGTTGT CTTGAGCATGCTGCGTCGGTGGCCAAGACATTCCTCACATCGGATGTCGTCGTCGTCGAG ATCAAGGAGCCTGAGCCTGCGCCCGTCACCAACCCGATGGACAACTCCGGCTACGGGTAC TGA

Peptide Sequence

PEP ID	Os06t0114000-03
PEP Infomation	pep chromosome:IRGSP-1.0:6:811064:815114:-1 gene:Os06g0114000 transcript:Os06t0114000-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 beta subunit 1 description:Hypothetical gene. (Os06t0114000-01);Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress protein) (GSP63). (Os06t0114000-02);Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment). (Os06t0114000-03);Similar to RuBisCo subunit binding-protein beta subunit (Fragment). (Os06t0114000-04)
Sequence	LVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLA GDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVEELKKLSKEVEDSELAD VAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVT DSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAYPILIIAEDIEQEALATLVVNK LRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEVGLSLDKADKSVLGTAAKVVLN KESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKLNERIAKLAGGVAVIQVGAQTE TELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAARVDAIKDNLENDEQKVGAEIVR RALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAATGQYEDLMAAGIIDPTKVVRCC LEHAASVAKTFLTSDVVVVEIKEPEPAPVTNPMDNSGYGY

Transcript Sequence

Transcript ID	Os06t0114000-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:6:811064:815114:-1 gene:Os06g0114000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:chaperonin 60 beta subunit 1 description:Hypothetical gene. (Os06t0114000-01);Similar to 60 kDa chaperonin (Protein Cpn60) (groEL protein) (63 kDa stress protein) (GSP63). (Os06t0114000-02);Similar to RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment). (Os06t0114000-03);Similar to RuBisCo subunit binding-protein beta subunit (Fragment). (Os06t0114000-04)
Sequence	CTTGTTGGAGTTACACTGGGACCAAAGGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGG TCCCCTAGGATTGTCAATGATGGTGTTACAGTTGCAAGAGAGGTTGAACTGGAGGATCCT GTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCT GGAGATGGCACAACTACTTCTGTTGTGCTTGCTCAGGGGCTGATTGCTGAGGGTGTTAAG GTCGTTGCAGCTGGTGCCAATCCTGTGCAAATTACACGTGGTATCGAGAAAACTGCGAAA GCACTAGTTGAAGAGCTAAAGAAATTGTCAAAGGAGGTTGAAGACAGTGAGCTTGCGGAT GTTGCTGCAGTCAGTGCTGGCAACAATTATGAAATCGGTAATATGATAGCAGAGGCTATG AGCAAGGTTGGCAGGAAGGGTGTGGTTACCCTTGAAGAAGGGAGAAGTTCTGAGAATAAT CTCTATGTTGTGGAGGGAATGCAGTTTGAACGTGGTTATATCTCCCCGTATTTTGTAACT GACAGCGAGAAAATGTCTGCAGAATATGAGAACTGCAAGCTTCTTTTGGTGGACAAAAAA ATCACCAACGCAAGGGATCTTATCAATGTTTTGGAGGAGGCCATAAGAGGTGCATACCCA ATTCTGATAATTGCTGAGGATATTGAGCAGGAGGCTCTTGCTACTCTTGTTGTCAACAAG CTTAGAGGGTCATTGAAAATTGCCGCTATCAAAGCCCCTGGTTTTGGTGAGCGCAAGACC CAGTACTTGGATGATATTGCCATTCTAACTGGAGCAACTGTAATCAGGGATGAAGTTGGG CTGTCACTTGACAAGGCAGACAAATCAGTTTTAGGAACGGCTGCAAAGGTGGTCCTTAAC AAAGAGTCAACAACAATTGTTGGTGATGGCAGTACACAGGAAGAAGTGACTAAGAGGGTT GCACAAATAAAAAATCTCATCGAGGCTGCCGAACAAGAATACGAGAAGGAAAAGCTCAAT GAGAGGATTGCAAAGCTTGCTGGTGGTGTTGCAGTCATTCAGGTGGGAGCACAAACAGAG ACCGAACTAAAAGAGAAGAAGTTGAGAGTTGAGGATGCCCTAAATGCTACCAAGGCTGCT GTTGAGGAAGGTATTGTTGTTGGTGGAGGGTGCACTCTTCTGAGACTGGCAGCTAGAGTT GACGCCATCAAGGACAACCTGGAGAATGATGAGCAGAAGGTTGGAGCTGAAATTGTAAGG AGAGCGCTGAGCTACCCGCTTAAATTGATTGCTAAGAATGCTGGTGTTAATGGAAGCGTT GTTACCGAGAAGGTTCTCTCTAACGATAACTTCAAGTTTGGTTACAATGCTGCAACTGGA CAGTACGAGGATTTGATGGCTGCTGGTATCATTGACCCCACTAAGGTGGTGAGATGTTGT CTTGAGCATGCTGCGTCGGTGGCCAAGACATTCCTCACATCGGATGTCGTCGTCGTCGAG ATCAAGGAGCCTGAGCCTGCGCCCGTCACCAACCCGATGGACAACTCCGGCTACGGGTAC TGATGACTAAGTTACAGTTACTTGTTCTCCGGGAAGGTCACTGGCCGTCAATTTTTGGGT AGTAGGCTTGAATCTGAATTTTGGTGAGATTTGAGTAGTTTCGAGACAATTTGATTTGTT CCCATGGGAAGTGAAATAAACAGGGTCACTATAGCAAAATTTGTGGTGTAACTGGAACGG CTGTCAAATTACGAAGGAAGATATTTGAAAGATTTCATGCT